Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
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[Homology]
Score
ABY93773.1TIGRFAM: primosome, DnaD subunit; PFAM: DnaD and phage-associated region. (324 aa)    
Predicted Functional Partners:
ABY93772.1
SMART: AAA ATPase.
 
  
 0.961
ABY95172.1
Hypothetical protein.
  
     0.764
ABY95756.1
Hypothetical protein.
  
     0.732
ABY95155.1
PFAM: single-strand binding protein/Primosomal replication protein n.
 
     0.634
ABY94441.1
Hypothetical protein.
  
     0.630
ABY93848.1
PFAM: Peptidoglycan-binding LysM.
  
     0.614
ABY93774.1
Peptidase M23B; PFAM: Peptidoglycan-binding LysM; peptidase M23B; G5 domain protein.
       0.572
ABY95135.1
Hypothetical protein.
  
     0.532
ABY94125.1
PFAM: YbbR family protein.
 
     0.528
ABY94152.1
Outer membrane lipoprotein-sorting protein-like protein.
  
     0.528
Your Current Organism:
Thermoanaerobacter pseudethanolicus
NCBI taxonomy Id: 340099
Other names: Clostridium thermohydrosulfuricum 39E, T. pseudethanolicus ATCC 33223, Thermoanaerobacter ethanolicus ATCC 33223, Thermoanaerobacter pseudethanolicus 39E, Thermoanaerobacter pseudethanolicus ATCC 33223, Thermoanaerobacter pseudethanolicus str. ATCC 33223, Thermoanaerobacter pseudethanolicus strain ATCC 33223
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