STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ABY93852.1Hypothetical protein. (70 aa)    
Predicted Functional Partners:
ABY93854.1
TIGRFAM: spore germination protein; PFAM: Spore germination protein.
       0.765
ABY93853.1
PFAM: GerA spore germination protein.
       0.764
ABY93855.1
PFAM: spore germination B3 GerAC family protein.
       0.764
ABY93851.1
Molybdopterin-guanine dinucleotide biosynthesis protein A-like protein.
       0.588
ispE
4-diphosphocytidyl-2C-methyl-D-erythritol kinase; Catalyzes the phosphorylation of the position 2 hydroxy group of 4-diphosphocytidyl-2C-methyl-D-erythritol.
       0.587
ABY93850.1
Transcriptional regulator, GntR family; PFAM: regulatory protein GntR, HTH; GntR domain protein.
       0.587
ABY93856.1
Hypothetical protein.
       0.567
ABY93848.1
PFAM: Peptidoglycan-binding LysM.
       0.406
ABY93857.1
Cell wall hydrolase, SleB; PFAM: Peptidoglycan-binding domain 1 protein; cell wall hydrolase, SleB.
       0.401
Your Current Organism:
Thermoanaerobacter pseudethanolicus
NCBI taxonomy Id: 340099
Other names: Clostridium thermohydrosulfuricum 39E, T. pseudethanolicus ATCC 33223, Thermoanaerobacter ethanolicus ATCC 33223, Thermoanaerobacter pseudethanolicus 39E, Thermoanaerobacter pseudethanolicus ATCC 33223, Thermoanaerobacter pseudethanolicus str. ATCC 33223, Thermoanaerobacter pseudethanolicus strain ATCC 33223
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