STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ABY93853.1PFAM: GerA spore germination protein. (534 aa)    
Predicted Functional Partners:
ABY93854.1
TIGRFAM: spore germination protein; PFAM: Spore germination protein.
 
  
 0.957
ABY93855.1
PFAM: spore germination B3 GerAC family protein.
 
  
 0.954
ABY93856.1
Hypothetical protein.
 
    0.898
ABY93858.1
PFAM: Propeptide, PepSY amd peptidase M4.
 
    0.808
ABY93981.1
PFAM: spore germination B3 GerAC family protein.
 
  
 0.802
ABY93844.1
TIGRFAM: transcriptional regulator, AbrB family; PFAM: SpoVT/AbrB domain protein.
 
     0.794
ABY94780.1
PFAM: Stage V sporulation AD family protein.
  
  
 0.792
ABY94779.1
PFAM: SpoVA protein.
  
  
 0.782
gpr
Spore protease; Initiates the rapid degradation of small, acid-soluble proteins during spore germination; Belongs to the peptidase A25 family.
  
  
 0.779
ABY94763.1
PFAM: peptidase S55, SpoIVB.
  
     0.774
Your Current Organism:
Thermoanaerobacter pseudethanolicus
NCBI taxonomy Id: 340099
Other names: Clostridium thermohydrosulfuricum 39E, T. pseudethanolicus ATCC 33223, Thermoanaerobacter ethanolicus ATCC 33223, Thermoanaerobacter pseudethanolicus 39E, Thermoanaerobacter pseudethanolicus ATCC 33223, Thermoanaerobacter pseudethanolicus str. ATCC 33223, Thermoanaerobacter pseudethanolicus strain ATCC 33223
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