Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
ABY93870.1PFAM: major facilitator superfamily MFS_1. (423 aa)    
Predicted Functional Partners:
ABY94905.1
PFAM: flagellar hook-length control protein.
  
     0.682
ABY94787.1
Hypothetical protein.
  
     0.680
ABY94441.1
Hypothetical protein.
  
     0.651
ABY94370.1
Hypothetical protein.
  
     0.611
ABY94592.1
Transcriptional regulator, XRE family; PFAM: helix-turn-helix domain protein.
  
     0.607
ABY94175.1
Hypothetical protein.
  
     0.568
ABY95651.1
PFAM: FeoA family protein.
  
     0.565
ABY94288.1
Hypothetical protein.
  
     0.558
ABY94935.1
Hypothetical protein.
  
     0.530
ABY94322.1
PFAM: protein of unknown function UPF0236.
  
     0.521
Your Current Organism:
Thermoanaerobacter pseudethanolicus
NCBI taxonomy Id: 340099
Other names: Clostridium thermohydrosulfuricum 39E, T. pseudethanolicus ATCC 33223, Thermoanaerobacter ethanolicus ATCC 33223, Thermoanaerobacter pseudethanolicus 39E, Thermoanaerobacter pseudethanolicus ATCC 33223, Thermoanaerobacter pseudethanolicus str. ATCC 33223, Thermoanaerobacter pseudethanolicus strain ATCC 33223
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