Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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Neighborhood
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Co-occurrence
Co-expression
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[Homology]
Score
ABY93981.1PFAM: spore germination B3 GerAC family protein. (394 aa)    
Predicted Functional Partners:
ABY93980.1
PFAM: GerA spore germination protein.
 
  
 0.965
ABY93979.1
TIGRFAM: spore germination protein; PFAM: Spore germination protein.
  
 0.911
ABY93853.1
PFAM: GerA spore germination protein.
 
  
 0.794
ABY94192.1
TIGRFAM: spore germination protein; PFAM: Spore germination protein.
 
  
 0.787
ABY93854.1
TIGRFAM: spore germination protein; PFAM: Spore germination protein.
 
  
 0.782
ABY93982.1
Hypothetical protein.
       0.780
ABY93858.1
PFAM: Propeptide, PepSY amd peptidase M4.
 
   
 0.755
ABY94772.1
PFAM: protein of unknown function DUF95, transmembrane.
  
   
 0.704
ABY94763.1
PFAM: peptidase S55, SpoIVB.
  
    0.691
ABY94788.1
Conserved hypothetical protein.
  
     0.654
Your Current Organism:
Thermoanaerobacter pseudethanolicus
NCBI taxonomy Id: 340099
Other names: Clostridium thermohydrosulfuricum 39E, T. pseudethanolicus ATCC 33223, Thermoanaerobacter ethanolicus ATCC 33223, Thermoanaerobacter pseudethanolicus 39E, Thermoanaerobacter pseudethanolicus ATCC 33223, Thermoanaerobacter pseudethanolicus str. ATCC 33223, Thermoanaerobacter pseudethanolicus strain ATCC 33223
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