Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
ABY94294.1PFAM: Integrase, catalytic region. (441 aa)    
Predicted Functional Partners:
ABY94295.1
SMART: AAA ATPase.
 
     0.931
ABY94293.1
Hypothetical protein.
 
     0.879
ABY93729.1
Hypothetical protein.
 
     0.775
ABY94091.1
Hypothetical protein.
 
     0.775
ABY95066.1
Hypothetical protein.
 
     0.775
ABY95505.1
Hypothetical protein.
 
     0.775
ABY95661.1
Hypothetical protein.
 
     0.775
ABY95673.1
Hypothetical protein.
 
     0.775
ABY95829.1
Hypothetical protein.
 
     0.775
ABY93731.1
SMART: AAA ATPase.
 
     0.764
Your Current Organism:
Thermoanaerobacter pseudethanolicus
NCBI taxonomy Id: 340099
Other names: Clostridium thermohydrosulfuricum 39E, T. pseudethanolicus ATCC 33223, Thermoanaerobacter ethanolicus ATCC 33223, Thermoanaerobacter pseudethanolicus 39E, Thermoanaerobacter pseudethanolicus ATCC 33223, Thermoanaerobacter pseudethanolicus str. ATCC 33223, Thermoanaerobacter pseudethanolicus strain ATCC 33223
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