STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ABY94331.1PFAM: alpha amylase, catalytic region; alpha amylase, C-terminal all-beta; SMART: alpha amylase, catalytic sub domain. (526 aa)    
Predicted Functional Partners:
ABY94332.1
PFAM: extracellular solute-binding protein, family 1.
 
  
 0.853
ABY95477.1
Amino acid transporter-like protein.
   
 0.767
ABY94334.1
PFAM: binding-protein-dependent transport systems inner membrane component.
 
  
 0.730
ABY95628.1
Hypothetical protein.
 
 
 0.718
ABY95459.1
TIGRFAM: PTS system, N-acetylglucosamine-specific IIBC subunit; PTS system, glucose-like IIB subunint; PFAM: phosphotransferase system PTS, EIIB protein; phosphotransferase system, EIIC.
  
  
 0.687
ABY94333.1
PFAM: binding-protein-dependent transport systems inner membrane component.
 
  
 0.670
ABY95164.1
Beta-phosphoglucomutase; TIGRFAM: HAD-superfamily hydrolase, subfamily IA, variant 3; beta-phosphoglucomutase; beta-phosphoglucomutase family hydrolase; PFAM: Haloacid dehalogenase domain protein hydrolase.
 
  
 0.583
ABY95168.1
Kojibiose phosphorylase; PFAM: glycoside hydrolase, family 65 domain protein; glycoside hydrolase family 65, central catalytic; glycoside hydrolase family 65 domain protein.
 
  
 0.521
ABY95159.1
Kojibiose phosphorylase; PFAM: glycoside hydrolase, family 65 domain protein; glycoside hydrolase family 65, central catalytic; glycoside hydrolase family 65 domain protein.
 
  
 0.495
murB
UDP-N-acetylenolpyruvoylglucosamine reductase; Cell wall formation.
     
 0.468
Your Current Organism:
Thermoanaerobacter pseudethanolicus
NCBI taxonomy Id: 340099
Other names: Clostridium thermohydrosulfuricum 39E, T. pseudethanolicus ATCC 33223, Thermoanaerobacter ethanolicus ATCC 33223, Thermoanaerobacter pseudethanolicus 39E, Thermoanaerobacter pseudethanolicus ATCC 33223, Thermoanaerobacter pseudethanolicus str. ATCC 33223, Thermoanaerobacter pseudethanolicus strain ATCC 33223
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.