Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
ABY94452.1Hypothetical protein. (223 aa)    
Predicted Functional Partners:
ABY94441.1
Hypothetical protein.
 
     0.806
ABY94016.1
PFAM: PGAP1 family protein.
  
     0.767
ABY95431.1
Hypothetical protein.
 
   
 0.761
ABY95756.1
Hypothetical protein.
 
     0.758
ABY94111.1
PFAM: Coat F domain protein.
  
     0.680
ABY95149.1
Hypothetical protein.
  
     0.672
ABY94526.1
PFAM: protein of unknown function YGGT.
  
     0.665
ABY94666.1
Hypothetical protein.
  
     0.647
ABY93829.1
PFAM: Abortive infection protein.
  
     0.645
ABY95264.1
PFAM: lipopolysaccharide biosynthesis protein.
  
    0.633
Your Current Organism:
Thermoanaerobacter pseudethanolicus
NCBI taxonomy Id: 340099
Other names: Clostridium thermohydrosulfuricum 39E, T. pseudethanolicus ATCC 33223, Thermoanaerobacter ethanolicus ATCC 33223, Thermoanaerobacter pseudethanolicus 39E, Thermoanaerobacter pseudethanolicus ATCC 33223, Thermoanaerobacter pseudethanolicus str. ATCC 33223, Thermoanaerobacter pseudethanolicus strain ATCC 33223
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