STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ABY94587.1PFAM: Integrase, catalytic region. (347 aa)    
Predicted Functional Partners:
ABY94586.1
PFAM: ATPase associated with various cellular activities, AAA_5.
       0.563
ABY94585.1
Hypothetical protein.
       0.529
ABY94582.1
PFAM: DNA methylase N-4/N-6 domain protein.
       0.495
ABY94583.1
PFAM: SNF2-related protein; helicase domain protein; type III restriction enzyme, res subunit; SMART: DEAD-like helicases-like.
       0.495
ABY94584.1
PFAM: PglZ domain.
       0.495
ABY94580.1
Hypothetical protein.
       0.471
ABY94581.1
Hypothetical protein.
       0.471
ABY94588.1
Hypothetical protein.
       0.430
ABY94589.1
Hypothetical protein.
       0.430
Your Current Organism:
Thermoanaerobacter pseudethanolicus
NCBI taxonomy Id: 340099
Other names: Clostridium thermohydrosulfuricum 39E, T. pseudethanolicus ATCC 33223, Thermoanaerobacter ethanolicus ATCC 33223, Thermoanaerobacter pseudethanolicus 39E, Thermoanaerobacter pseudethanolicus ATCC 33223, Thermoanaerobacter pseudethanolicus str. ATCC 33223, Thermoanaerobacter pseudethanolicus strain ATCC 33223
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.