Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
ABY94960.1PFAM: Dak phosphatase. (533 aa)    
Predicted Functional Partners:
ABY94958.1
TIGRFAM: degV family protein; PFAM: DegV family protein.
 
 0.998
ABY94961.1
PFAM: protein of unknown function DUF322.
 
  
 0.995
recG
ATP-dependent DNA helicase RecG; Critical role in recombination and DNA repair. Helps process Holliday junction intermediates to mature products by catalyzing branch migration. Has a DNA unwinding activity characteristic of a DNA helicase with a 3'- to 5'- polarity. Unwinds branched duplex DNA (Y- DNA); Belongs to the helicase family. RecG subfamily.
  
    0.858
rpmB
PFAM: ribosomal protein L28; Belongs to the bacterial ribosomal protein bL28 family.
       0.576
polC
DNA polymerase III, alpha subunit; Required for replicative DNA synthesis. This DNA polymerase also exhibits 3' to 5' exonuclease activity.
 
     0.564
ABY94751.1
PFAM: protein of unknown function DUF322.
 
  
 0.518
ABY94957.1
PFAM: small acid-soluble spore protein, alpha/beta type.
       0.500
ABY94953.1
Hypothetical protein.
 
     0.448
ABY95369.1
Hypothetical protein.
  
  
 0.442
ABY94762.1
DNA repair protein RecN; May be involved in recombinational repair of damaged DNA.
   
    0.437
Your Current Organism:
Thermoanaerobacter pseudethanolicus
NCBI taxonomy Id: 340099
Other names: Clostridium thermohydrosulfuricum 39E, T. pseudethanolicus ATCC 33223, Thermoanaerobacter ethanolicus ATCC 33223, Thermoanaerobacter pseudethanolicus 39E, Thermoanaerobacter pseudethanolicus ATCC 33223, Thermoanaerobacter pseudethanolicus str. ATCC 33223, Thermoanaerobacter pseudethanolicus strain ATCC 33223
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