Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
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[Homology]
Score
ABY95551.1Hypothetical protein. (441 aa)    
Predicted Functional Partners:
ABY95552.1
PFAM: protein of unknown function DUF58.
       0.778
ABY95553.1
PFAM: ATPase associated with various cellular activities, AAA_3; ATPase associated with various cellular activities, AAA_5; SMART: AAA ATPase.
       0.730
ABY95550.1
PFAM: LemA family protein.
       0.576
ABY95554.1
Ferric uptake regulator, Fur family; PFAM: ferric-uptake regulator; Belongs to the Fur family.
       0.470
ABY95555.1
PFAM: periplasmic solute binding protein; Belongs to the bacterial solute-binding protein 9 family.
       0.441
ABY95556.1
PFAM: ABC transporter related; SMART: AAA ATPase.
       0.441
ABY95557.1
PFAM: ABC-3 protein.
       0.441
Your Current Organism:
Thermoanaerobacter pseudethanolicus
NCBI taxonomy Id: 340099
Other names: Clostridium thermohydrosulfuricum 39E, T. pseudethanolicus ATCC 33223, Thermoanaerobacter ethanolicus ATCC 33223, Thermoanaerobacter pseudethanolicus 39E, Thermoanaerobacter pseudethanolicus ATCC 33223, Thermoanaerobacter pseudethanolicus str. ATCC 33223, Thermoanaerobacter pseudethanolicus strain ATCC 33223
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