STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ABY95756.1Hypothetical protein. (351 aa)    
Predicted Functional Partners:
ABY93848.1
PFAM: Peptidoglycan-binding LysM.
 
 
 
 0.820
ABY94016.1
PFAM: PGAP1 family protein.
  
  
 0.783
ABY94441.1
Hypothetical protein.
  
     0.768
ABY94152.1
Outer membrane lipoprotein-sorting protein-like protein.
  
   
 0.766
ABY94452.1
Hypothetical protein.
 
     0.759
gyrB
DNA topoisomerase IV, B subunit; A type II topoisomerase that negatively supercoils closed circular double-stranded (ds) DNA in an ATP-dependent manner to modulate DNA topology and maintain chromosomes in an underwound state. Negative supercoiling favors strand separation, and DNA replication, transcription, recombination and repair, all of which involve strand separation. Also able to catalyze the interconversion of other topological isomers of dsDNA rings, including catenanes and knotted rings. Type II topoisomerases break and join 2 DNA strands simultaneously in an ATP-dependent manner.
   
 
 0.751
ABY94666.1
Hypothetical protein.
  
     0.751
ABY94794.1
PFAM: Oxidoreductase FAD-binding domain protein.
 
     0.740
ABY94526.1
PFAM: protein of unknown function YGGT.
 
    0.735
ABY95431.1
Hypothetical protein.
 
     0.735
Your Current Organism:
Thermoanaerobacter pseudethanolicus
NCBI taxonomy Id: 340099
Other names: Clostridium thermohydrosulfuricum 39E, T. pseudethanolicus ATCC 33223, Thermoanaerobacter ethanolicus ATCC 33223, Thermoanaerobacter pseudethanolicus 39E, Thermoanaerobacter pseudethanolicus ATCC 33223, Thermoanaerobacter pseudethanolicus str. ATCC 33223, Thermoanaerobacter pseudethanolicus strain ATCC 33223
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.