STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ABY95758.13D domain protein; PFAM: protein of unknown function DUF348; 3D domain protein; G5 domain protein. (343 aa)    
Predicted Functional Partners:
rsmA
Dimethyladenosine transferase; Specifically dimethylates two adjacent adenosines (A1518 and A1519) in the loop of a conserved hairpin near the 3'-end of 16S rRNA in the 30S particle. May play a critical role in biogenesis of 30S subunits.
  
  
 0.937
ABY95759.1
TIGRFAM: hydrolase, TatD family; PFAM: TatD-related deoxyribonuclease.
     
 0.764
ispE
4-diphosphocytidyl-2C-methyl-D-erythritol kinase; Catalyzes the phosphorylation of the position 2 hydroxy group of 4-diphosphocytidyl-2C-methyl-D-erythritol.
     
 0.754
ABY95756.1
Hypothetical protein.
 
     0.723
metG
methionyl-tRNA synthetase; Is required not only for elongation of protein synthesis but also for the initiation of all mRNA translation through initiator tRNA(fMet) aminoacylation.
       0.648
ABY94422.1
Hypothetical protein.
     
 0.545
ABY93816.1
Protein of unknown function DUF1034; PFAM: peptidase S8 and S53, subtilisin, kexin, sedolisin; SH3 domain protein; protease-associated PA domain protein; Ig domain protein, group 2 domain protein; protein of unknown function DUF1034; protein of unknown function DUF1058; Variant SH3 domain protein; SH3, type 3 domain protein; SMART: SH3 domain protein domain protein; Belongs to the peptidase S8 family.
  
  
 0.507
ABY94473.1
PFAM: protein of unknown function DUF881.
 
     0.496
ABY93845.1
PFAM: peptidase U57, YabG.
 
     0.488
ABY94474.1
PFAM: protein of unknown function DUF1290.
  
     0.480
Your Current Organism:
Thermoanaerobacter pseudethanolicus
NCBI taxonomy Id: 340099
Other names: Clostridium thermohydrosulfuricum 39E, T. pseudethanolicus ATCC 33223, Thermoanaerobacter ethanolicus ATCC 33223, Thermoanaerobacter pseudethanolicus 39E, Thermoanaerobacter pseudethanolicus ATCC 33223, Thermoanaerobacter pseudethanolicus str. ATCC 33223, Thermoanaerobacter pseudethanolicus strain ATCC 33223
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