Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
ABY95762.1PFAM: nucleoside recognition domain protein. (173 aa)    
Predicted Functional Partners:
ABY95763.1
PFAM: nucleoside recognition domain protein.
  
 0.999
ABY94952.1
PFAM: nucleoside recognition domain protein.
 
  
 0.683
ABY95764.1
TIGRFAM: transcriptional regulator, AbrB family; PFAM: SpoVT/AbrB domain protein.
     
 0.630
ABY94744.1
Hypothetical protein.
  
  
 0.605
ABY94772.1
PFAM: protein of unknown function DUF95, transmembrane.
  
  
 0.601
ABY95761.1
TIGRFAM: metal dependent phophohydrolase; PFAM: Polynucleotide adenylyltransferase region; metal-dependent phosphohydrolase, HD sub domain; Belongs to the tRNA nucleotidyltransferase/poly(A) polymerase family.
       0.569
ABY94746.1
Hypothetical protein.
  
   
 0.553
ABY94743.1
SMART: AAA ATPase.
  
  
 0.514
ABY94499.1
Hypothetical protein; ATPase. Has a role at an early stage in the morphogenesis of the spore coat.
  
   
 0.497
ABY95023.1
PFAM: protein of unknown function DUF1429.
  
   
 0.484
Your Current Organism:
Thermoanaerobacter pseudethanolicus
NCBI taxonomy Id: 340099
Other names: Clostridium thermohydrosulfuricum 39E, T. pseudethanolicus ATCC 33223, Thermoanaerobacter ethanolicus ATCC 33223, Thermoanaerobacter pseudethanolicus 39E, Thermoanaerobacter pseudethanolicus ATCC 33223, Thermoanaerobacter pseudethanolicus str. ATCC 33223, Thermoanaerobacter pseudethanolicus strain ATCC 33223
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