STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ABY95782.1Transcriptional regulator, LysR family; PFAM: regulatory protein, LysR; LysR, substrate-binding; Belongs to the LysR transcriptional regulatory family. (297 aa)    
Predicted Functional Partners:
ABY95783.1
Hypothetical protein; Belongs to the sulfur carrier protein TusA family.
 
   
 0.885
ABY95781.1
PFAM: protein of unknown function DUF395, YeeE/YedE.
 
     0.660
ABY95780.1
PFAM: SirA family protein; Belongs to the sulfur carrier protein TusA family.
 
   
 0.578
ABY95779.1
PFAM: protein of unknown function DUF395, YeeE/YedE.
 
     0.545
ABY95778.1
PFAM: FAD-dependent pyridine nucleotide-disulphide oxidoreductase; glucose-inhibited division protein A; HI0933 family protein.
     
 0.533
ABY94281.1
Transcriptional regulator, AraC family; PFAM: helix-turn-helix- domain containing protein, AraC type; Cupin 2, conserved barrel domain protein.
  
  
 0.477
ABY95372.1
Two component transcriptional regulator, LytTR family; PFAM: response regulator receiver; LytTr DNA-binding region.
  
   
 0.401
Your Current Organism:
Thermoanaerobacter pseudethanolicus
NCBI taxonomy Id: 340099
Other names: Clostridium thermohydrosulfuricum 39E, T. pseudethanolicus ATCC 33223, Thermoanaerobacter ethanolicus ATCC 33223, Thermoanaerobacter pseudethanolicus 39E, Thermoanaerobacter pseudethanolicus ATCC 33223, Thermoanaerobacter pseudethanolicus str. ATCC 33223, Thermoanaerobacter pseudethanolicus strain ATCC 33223
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.