STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ABY95788.1Putative sigma54 specific transcriptional regulator; PFAM: sigma-54 factor, interaction domain-containing protein; SMART: AAA ATPase. (523 aa)    
Predicted Functional Partners:
ABY95789.1
PFAM: protein of unknown function DUF917.
       0.796
ABY94389.1
TIGRFAM: RNA polymerase sigma-54 factor, RpoN; PFAM: sigma-54 factor; sigma-54 factor, core-binding region; sigma-54, DNA-binding domain protein.
 
   
 0.793
ABY95790.1
Hypothetical protein.
       0.789
ABY93893.1
Hydrogenase with PAS/PAC sensor; TIGRFAM: PAS sensor protein; PFAM: 4Fe-4S ferredoxin, iron-sulfur binding domain protein; hydrogenase large subunit domain protein; Fe-S cluster domain protein; PAS fold domain protein; SMART: PAS domain containing protein.
 
    
 0.600
Your Current Organism:
Thermoanaerobacter pseudethanolicus
NCBI taxonomy Id: 340099
Other names: Clostridium thermohydrosulfuricum 39E, T. pseudethanolicus ATCC 33223, Thermoanaerobacter ethanolicus ATCC 33223, Thermoanaerobacter pseudethanolicus 39E, Thermoanaerobacter pseudethanolicus ATCC 33223, Thermoanaerobacter pseudethanolicus str. ATCC 33223, Thermoanaerobacter pseudethanolicus strain ATCC 33223
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