STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ABY95843.1Hypothetical protein. (241 aa)    
Predicted Functional Partners:
ABY95845.1
PFAM: type II secretion system protein E.
  
  
 0.877
ABY95847.1
PFAM: SAF domain.
  
    0.804
ABY95846.1
ATPase involved in chromosome partitioning-like protein.
  
  
 0.781
ABY95848.1
Hypothetical protein.
  
  
 0.781
ABY95844.1
PFAM: type II secretion system protein.
       0.780
ABY95849.1
Hypothetical protein.
       0.746
ABY95850.1
PFAM: peptidase M23B; Lytic transglycosylase, catalytic.
       0.741
ABY95839.1
Hypothetical protein.
  
  
 0.700
ABY95842.1
Hypothetical protein.
       0.603
ABY95851.1
Hypothetical protein.
       0.507
Your Current Organism:
Thermoanaerobacter pseudethanolicus
NCBI taxonomy Id: 340099
Other names: Clostridium thermohydrosulfuricum 39E, T. pseudethanolicus ATCC 33223, Thermoanaerobacter ethanolicus ATCC 33223, Thermoanaerobacter pseudethanolicus 39E, Thermoanaerobacter pseudethanolicus ATCC 33223, Thermoanaerobacter pseudethanolicus str. ATCC 33223, Thermoanaerobacter pseudethanolicus strain ATCC 33223
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.