STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Pars_0146PFAM: AIR synthase related protein domain protein; KEGG: pai:PAE0949 hydrogenase expression/formation protein HypE. (335 aa)    
Predicted Functional Partners:
Pars_1287
PFAM: hydrogenase formation HypD protein; KEGG: pis:Pisl_0205 hydrogenase formation HypD protein.
 
 
 0.980
Pars_1280
TIGRFAM: [NiFe] hydrogenase maturation protein HypF; PFAM: acylphosphatase; SUA5/yciO/yrdC, N-terminal domain; KEGG: pis:Pisl_0207 (NiFe) hydrogenase maturation protein HypF.
 
 
 0.942
Pars_1288
KEGG: pis:Pisl_0206 hypothetical protein.
  
 
 0.922
Pars_0147
Putative transcriptional regulator, GntR family; KEGG: pai:PAE0951 aminotransferase, conjectural.
       0.581
Pars_0148
PFAM: protein of unknown function DUF99; KEGG: pai:PAE0952 conserved hypothetical protein; Belongs to the UPF0215 family.
       0.560
Pars_0149
PFAM: extracellular solute-binding protein, family 1; KEGG: pai:PAE0953 putrescine/spermidine binding protein, conjectural.
       0.551
Pars_1298
PFAM: nickel-dependent hydrogenase, large subunit; KEGG: pis:Pisl_0197 nickel-dependent hydrogenase, large subunit; Belongs to the [NiFe]/[NiFeSe] hydrogenase large subunit family.
 
   
 0.431
Pars_1301
PFAM: Nickel-iron dehydrogenase small subunit, N-terminal domain protein; KEGG: pis:Pisl_0200 nickel-iron dehydrogenase small subunit, N-terminal domain protein.
 
   
 0.411
Your Current Organism:
Pyrobaculum arsenaticum
NCBI taxonomy Id: 340102
Other names: P. arsenaticum DSM 13514, Pyrobaculum arsenaticum DSM 13514, Pyrobaculum arsenaticum str. DSM 13514, Pyrobaculum arsenaticum strain DSM 13514
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.