STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Pars_0341PFAM: glycosyl transferase, family 2; KEGG: tpe:Tpen_1727 glycosyl transferase, family 2. (302 aa)    
Predicted Functional Partners:
Pars_0340
PFAM: NAD-dependent epimerase/dehydratase; short-chain dehydrogenase/reductase SDR; 3-beta hydroxysteroid dehydrogenase/isomerase; polysaccharide biosynthesis protein CapD; dTDP-4-dehydrorhamnose reductase; Male sterility C-terminal domain; KEGG: pab:PAB2145 UDP-glucose 4-epimerase.
 
 
 0.831
Pars_0339
KEGG: mth:MTH381 hypothetical protein.
       0.596
Pars_0338
Membrane protein-like protein; KEGG: pfu:PF0810 hypothetical protein.
 
     0.549
Pars_0381
PFAM: glycosyl transferase, group 1; KEGG: pis:Pisl_1466 glycosyl transferase, group 1.
 
  
 0.518
Pars_2113
PFAM: NAD-dependent epimerase/dehydratase; 3-beta hydroxysteroid dehydrogenase/isomerase; polysaccharide biosynthesis protein CapD; dTDP-4-dehydrorhamnose reductase; Male sterility C-terminal domain; KEGG: pai:PAE1922 UDP-glucose 4-epimerase.
 
 
 0.511
Pars_0361
PFAM: glycosyl transferase, group 1; KEGG: pai:PAE0430 glycosyltransferase (type 1).
 
  
 0.501
Pars_0059
PFAM: protein kinase; SMART: tyrosine protein kinase; serine/threonine protein kinase; KEGG: pai:PAE0815 serine/threonine protein kinase, putative.
 
 
 0.468
Pars_2355
PFAM: peptidase S8 and S53, subtilisin, kexin, sedolisin; KEGG: pai:PAE0712 surface layer-associated stable protease, conjectural; Belongs to the peptidase S8 family.
 
 
 0.453
Pars_1965
SPP-like hydrolase; Catalyzes the dephosphorylation of 2-phosphoglycolate.
 
 
 0.447
Pars_0375
UDP-galactopyranose mutase; KEGG: pai:PAE0546 hypothetical protein.
 
  
 0.446
Your Current Organism:
Pyrobaculum arsenaticum
NCBI taxonomy Id: 340102
Other names: P. arsenaticum DSM 13514, Pyrobaculum arsenaticum DSM 13514, Pyrobaculum arsenaticum str. DSM 13514, Pyrobaculum arsenaticum strain DSM 13514
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.