STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Pars_0490D-lactate dehydrogenase (cytochrome); PFAM: FAD linked oxidase domain protein; KEGG: pai:PAE1286 glycolate oxidase subunit. (471 aa)    
Predicted Functional Partners:
Pars_0492
PFAM: 4Fe-4S ferredoxin, iron-sulfur binding domain protein; protein of unknown function DUF224, cysteine-rich region domain protein; KEGG: pai:PAE1282 glycolate oxidase subunit GlcF.
 
 
 0.990
Pars_0491
PFAM: FAD linked oxidase domain protein; KEGG: pai:PAE1284 glycolate oxidase subunit.
 
  
 
0.984
Pars_0489
PFAM: malate synthase; KEGG: pai:PAE1287 malate synthase.
  
 
 0.961
Pars_0508
TIGRFAM: HAD-superfamily hydrolase, subfamily IA, variant 3; PFAM: Haloacid dehalogenase domain protein hydrolase; KEGG: afu:AF0928 hypothetical protein.
    
 0.922
Pars_2266
PFAM: D-isomer specific 2-hydroxyacid dehydrogenase, catalytic region; D-isomer specific 2-hydroxyacid dehydrogenase, NAD-binding; KEGG: ape:APE_2507.1 putative glyoxylate reductase.
  
 
 0.922
Pars_1870
Serine--glyoxylate transaminase; PFAM: aminotransferase, class V; KEGG: pai:PAE3447 aminotransferase, class-V.
  
 
 0.918
Pars_2089
D-lactate dehydrogenase (cytochrome); PFAM: FAD linked oxidase domain protein; KEGG: pai:PAE2035 D-lactate dehydrogenase.
  
  
 
0.912
Pars_1965
SPP-like hydrolase; Catalyzes the dephosphorylation of 2-phosphoglycolate.
    
 0.908
Pars_0493
PFAM: 4Fe-4S ferredoxin, iron-sulfur binding domain protein; KEGG: pai:PAE1281 glycolate oxidase subunit, putative.
 
  
 0.737
fni
Isopentenyl-diphosphate delta-isomerase, type 2; Involved in the biosynthesis of isoprenoids. Catalyzes the 1,3-allylic rearrangement of the homoallylic substrate isopentenyl (IPP) to its allylic isomer, dimethylallyl diphosphate (DMAPP).
  
 
 0.686
Your Current Organism:
Pyrobaculum arsenaticum
NCBI taxonomy Id: 340102
Other names: P. arsenaticum DSM 13514, Pyrobaculum arsenaticum DSM 13514, Pyrobaculum arsenaticum str. DSM 13514, Pyrobaculum arsenaticum strain DSM 13514
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.