STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Pars_1027PFAM: HEPN domain protein; KEGG: tpe:Tpen_1698 HEPN domain protein. (130 aa)    
Predicted Functional Partners:
Pars_1028
PFAM: DNA polymerase, beta domain protein region; KEGG: ape:APE_0761.1 hypothetical protein.
   
   0.790
Pars_0820
PFAM: HEPN domain protein; KEGG: pai:PAE1894 hypothetical protein.
  
     0.719
Pars_1067
PFAM: DNA polymerase, beta domain protein region; KEGG: pai:PAE1153 hypothetical protein.
 
 
   0.597
Pars_1025
PFAM: DNA polymerase, beta domain protein region; KEGG: pai:PAE2760 paREP11.
   
   0.562
Pars_0251
PFAM: DNA polymerase, beta domain protein region; KEGG: pai:PAE0273 hypothetical protein.
 
 
   0.543
Pars_1026
PFAM: protein of unknown function DUF86; KEGG: pai:PAE2759 hypothetical protein.
       0.528
Pars_0319
PFAM: protein of unknown function DUF86; KEGG: pab:PAB2339 hypothetical protein.
 
     0.439
Your Current Organism:
Pyrobaculum arsenaticum
NCBI taxonomy Id: 340102
Other names: P. arsenaticum DSM 13514, Pyrobaculum arsenaticum DSM 13514, Pyrobaculum arsenaticum str. DSM 13514, Pyrobaculum arsenaticum strain DSM 13514
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.