Export your current network:
... as a bitmap image:
file format is 'PNG': portable network graphic
... as a high-resolution bitmap:
same PNG format, but at higher resolution
... as a vector graphic:
SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc
... as short tabular text output:
TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)
... as tabular text output:
TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)
... as an XML summary:
structured XML interaction data, according to the 'PSI-MI' data standard
... protein node degrees:
node degree of proteins in your network (given the current score cut-off)
... network coordinates:
a flat-file format describing the coordinates and colors of nodes in the network
... protein sequences:
MFA: multi-fasta format - containing the aminoacid sequences in the network
... protein annotations:
a tab-delimited file describing the names, domains and descriptions of proteins in your network
... functional annotations:
a tab-delimited file containing all known functional terms of protiens in your network
Browse interactions in tabular form:
node1 | node2 | node1 accession | node2 accession | node1 annotation | node2 annotation | score |
Pars_0453 | Pars_1077 | Pars_0453 | Pars_1077 | PFAM: Enoyl-CoA hydratase/isomerase; 3-hydroxyacyl-CoA dehydrogenase domain protein; 3-hydroxyacyl-CoA dehydrogenase, NAD-binding; KEGG: pai:PAE1383 3-hydroxyacyl-CoA dehydrogenase and enoyl-CoA hydratase. | Kynurenine formamidase; PFAM: cyclase family protein; KEGG: pai:PAE0036 hypothetical protein. | 0.476 |
Pars_1076 | Pars_1077 | Pars_1076 | Pars_1077 | Conserved hypothetical protein; KEGG: pai:PAE0042 egghead homolog. | Kynurenine formamidase; PFAM: cyclase family protein; KEGG: pai:PAE0036 hypothetical protein. | 0.436 |
Pars_1077 | Pars_0453 | Pars_1077 | Pars_0453 | Kynurenine formamidase; PFAM: cyclase family protein; KEGG: pai:PAE0036 hypothetical protein. | PFAM: Enoyl-CoA hydratase/isomerase; 3-hydroxyacyl-CoA dehydrogenase domain protein; 3-hydroxyacyl-CoA dehydrogenase, NAD-binding; KEGG: pai:PAE1383 3-hydroxyacyl-CoA dehydrogenase and enoyl-CoA hydratase. | 0.476 |
Pars_1077 | Pars_1076 | Pars_1077 | Pars_1076 | Kynurenine formamidase; PFAM: cyclase family protein; KEGG: pai:PAE0036 hypothetical protein. | Conserved hypothetical protein; KEGG: pai:PAE0042 egghead homolog. | 0.436 |
Pars_1077 | thrB | Pars_1077 | Pars_1078 | Kynurenine formamidase; PFAM: cyclase family protein; KEGG: pai:PAE0036 hypothetical protein. | Homoserine kinase; Catalyzes the ATP-dependent phosphorylation of L-homoserine to L-homoserine phosphate; Belongs to the GHMP kinase family. Homoserine kinase subfamily. | 0.775 |
thrB | Pars_1077 | Pars_1078 | Pars_1077 | Homoserine kinase; Catalyzes the ATP-dependent phosphorylation of L-homoserine to L-homoserine phosphate; Belongs to the GHMP kinase family. Homoserine kinase subfamily. | Kynurenine formamidase; PFAM: cyclase family protein; KEGG: pai:PAE0036 hypothetical protein. | 0.775 |