STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Pars_1252PFAM: protein of unknown function DUF1634; KEGG: sso:SSO0014 hypothetical protein. (127 aa)    
Predicted Functional Partners:
Pars_1253
PFAM: protein of unknown function DUF81; KEGG: sso:SSO0015 hypothetical protein.
 
  
 0.902
Pars_0244
PFAM: Rieske [2Fe-2S] domain protein; KEGG: pai:PAE2734 Rieske iron sulfur protein, putative.
  
     0.691
Pars_1856
KEGG: pai:PAE3468 hypothetical protein.
  
     0.637
Pars_0391
PFAM: Lysine exporter protein (LYSE/YGGA); KEGG: pai:PAE1266 hypothetical protein.
 
     0.602
Pars_0384
PFAM: ATPase; KEGG: sso:SSO1545 hypothetical protein.
  
     0.587
ef1b
Translation elongation factor 1B (aEF-1B); Promotes the exchange of GDP for GTP in EF-1-alpha/GDP, thus allowing the regeneration of EF-1-alpha/GTP that could then be used to form the ternary complex EF-1-alpha/GTP/AAtRNA.
  
     0.587
Pars_1254
PFAM: putative RNA methylase; THUMP domain protein; KEGG: pai:PAE3215 hypothetical protein.
       0.569
Pars_0599
PFAM: MscS Mechanosensitive ion channel; KEGG: pai:PAE1270 hypothetical protein.
  
     0.537
Pars_0390
PFAM: protein of unknown function DUF981; KEGG: pai:PAE2526 hypothetical protein.
  
     0.512
Pars_1208
PFAM: acylphosphatase; KEGG: pai:PAE2603 conserved protein with C terminal acylphosphatase domain.
 
     0.506
Your Current Organism:
Pyrobaculum arsenaticum
NCBI taxonomy Id: 340102
Other names: P. arsenaticum DSM 13514, Pyrobaculum arsenaticum DSM 13514, Pyrobaculum arsenaticum str. DSM 13514, Pyrobaculum arsenaticum strain DSM 13514
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.