STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Pars_1306PFAM: hydrogenase expression/synthesis, HypA; KEGG: pis:Pisl_0192 hydrogenase expression/synthesis, HypA. (136 aa)    
Predicted Functional Partners:
Pars_1307
KEGG: pis:Pisl_0191 conserved hypothetical protein.
 
 
   0.974
Pars_1298
PFAM: nickel-dependent hydrogenase, large subunit; KEGG: pis:Pisl_0197 nickel-dependent hydrogenase, large subunit; Belongs to the [NiFe]/[NiFeSe] hydrogenase large subunit family.
 
 
 0.925
Pars_0044
Conserved protein; Binds and transfers iron-sulfur (Fe-S) clusters to target apoproteins. Can hydrolyze ATP; Belongs to the Mrp/NBP35 ATP-binding proteins family.
 
 
   0.860
Pars_1288
KEGG: pis:Pisl_0206 hypothetical protein.
 
  
 0.820
Pars_1297
TIGRFAM: hydrogenase maturation protease; KEGG: pis:Pisl_0196 hydrogenase maturation protease.
 
  
 0.798
Pars_1287
PFAM: hydrogenase formation HypD protein; KEGG: pis:Pisl_0205 hydrogenase formation HypD protein.
 
  
 0.774
Pars_1305
KEGG: pis:Pisl_0193 putative transcriptional regulator, CopG family.
     
 0.753
Pars_1280
TIGRFAM: [NiFe] hydrogenase maturation protein HypF; PFAM: acylphosphatase; SUA5/yciO/yrdC, N-terminal domain; KEGG: pis:Pisl_0207 (NiFe) hydrogenase maturation protein HypF.
 
   
 0.732
Pars_1309
TIGRFAM: hydrogenase expression/formation protein HypE; PFAM: AIR synthase related protein; AIR synthase related protein domain protein; KEGG: pis:Pisl_0203 hydrogenase expression/formation protein HypE.
  
  
 0.728
Pars_1301
PFAM: Nickel-iron dehydrogenase small subunit, N-terminal domain protein; KEGG: pis:Pisl_0200 nickel-iron dehydrogenase small subunit, N-terminal domain protein.
 
  
 0.724
Your Current Organism:
Pyrobaculum arsenaticum
NCBI taxonomy Id: 340102
Other names: P. arsenaticum DSM 13514, Pyrobaculum arsenaticum DSM 13514, Pyrobaculum arsenaticum str. DSM 13514, Pyrobaculum arsenaticum strain DSM 13514
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