STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Pars_1813KEGG: pai:PAE2278 actin-like protein. (193 aa)    
Predicted Functional Partners:
Pars_1814
SMART: actin/actin family protein; KEGG: pai:PAE2276 hypothetical protein.
   
   0.999
Pars_1815
KEGG: pai:PAE2275 hypothetical protein.
       0.728
Pars_1811
PFAM: SMC domain protein; KEGG: pai:PAE2280 hypothetical protein.
       0.714
Pars_1812
KEGG: pis:Pisl_0885 hypothetical protein.
       0.708
Pars_1816
PFAM: nitroreductase; KEGG: pai:PAE2273 reductase, putative.
       0.633
Pars_1817
KEGG: pai:PAE2272 hypothetical protein.
       0.468
Your Current Organism:
Pyrobaculum arsenaticum
NCBI taxonomy Id: 340102
Other names: P. arsenaticum DSM 13514, Pyrobaculum arsenaticum DSM 13514, Pyrobaculum arsenaticum str. DSM 13514, Pyrobaculum arsenaticum strain DSM 13514
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.