STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Pars_1963PFAM: Resolvase, N-terminal domain; KEGG: pai:PAE3513 resolvase, conjectural. (251 aa)    
Predicted Functional Partners:
Pars_1974
KEGG: pai:PAE3482 hypothetical protein.
   
    0.777
Pars_1962
KEGG: pai:PAE3512 hypothetical protein.
       0.647
Pars_1055
KEGG: pai:PAE3683 hypothetical protein.
   
    0.624
Pars_1141
KEGG: pai:PAE3683 hypothetical protein.
   
    0.624
Pars_0929
PFAM: cytochrome c biogenesis protein, transmembrane region; KEGG: pai:PAE1538 hypothetical protein.
 
    0.607
Pars_0674
PFAM: cytochrome c biogenesis protein, transmembrane region; KEGG: pai:PAE1538 hypothetical protein.
  
    0.544
Pars_0897
PFAM: protein of unknown function DUF6, transmembrane; KEGG: pai:PAE1328 hypothetical protein.
  
    0.497
Pars_1535
Transporter, CPA2 family; PFAM: sodium/hydrogen exchanger; KEGG: pai:PAE2319 hypothetical protein; TC 2.A.37.
  
    0.482
Pars_0465
PFAM: protein of unknown function DUF6, transmembrane; KEGG: pis:Pisl_1445 protein of unknown function DUF6, transmembrane.
  
    0.473
Pars_1523
PFAM: helicase domain protein; DEAD/DEAH box helicase domain protein; SMART: DEAD-like helicases-like; KEGG: pai:PAE2298 ATP-dependent helicase.
   
    0.463
Your Current Organism:
Pyrobaculum arsenaticum
NCBI taxonomy Id: 340102
Other names: P. arsenaticum DSM 13514, Pyrobaculum arsenaticum DSM 13514, Pyrobaculum arsenaticum str. DSM 13514, Pyrobaculum arsenaticum strain DSM 13514
Server load: low (18%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.