STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Pars_1981SMART: helix-turn-helix domain protein; KEGG: pai:PAE1638 putative transcriptional regulator. (237 aa)    
Predicted Functional Partners:
Pars_0793
TIGRFAM: putative hydroxymethylglutaryl-CoA synthase; PFAM: 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III C terminal domain protein; KEGG: pai:PAE2185 3-oxoacyl-[acyl-carrier-protein] synthase; Belongs to the thiolase-like superfamily. UPF0219 family.
  
    0.887
Pars_1983
KEGG: pai:PAE1635 hypothetical protein.
 
     0.805
Pars_0794
PFAM: protein of unknown function DUF35; KEGG: pai:PAE2184 conserved protein associated with acetyl-CoA C-acyltransferase.
  
    0.711
Pars_1901
PFAM: Radical SAM domain protein; KEGG: pai:PAE2255 hypothetical protein.
  
     0.669
Pars_1840
NMD3; PFAM: NMD3; KEGG: pai:PAE1653 hypothetical protein.
  
   
 0.643
Pars_2091
PFAM: TatD-related deoxyribonuclease; KEGG: pai:PAE2050 hypothetical protein.
  
     0.639
Pars_0457
PFAM: Thiolase; KEGG: pis:Pisl_1437 thiolase.
  
    0.628
Pars_0795
KEGG: pai:PAE2183 acetyl-CoA C-acyltransferase.
  
    0.628
Pars_0458
PFAM: protein of unknown function DUF35; KEGG: pai:PAE1375 conserved protein associated with acetyl-CoA C-acyltransferase.
  
    0.605
Pars_1988
PFAM: helix-turn-helix domain protein; KEGG: pai:PAE1627 putative transcriptional regulator.
  
   
 0.601
Your Current Organism:
Pyrobaculum arsenaticum
NCBI taxonomy Id: 340102
Other names: P. arsenaticum DSM 13514, Pyrobaculum arsenaticum DSM 13514, Pyrobaculum arsenaticum str. DSM 13514, Pyrobaculum arsenaticum strain DSM 13514
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.