Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
Pars_1982KEGG: pai:PAE1636 hypothetical protein. (329 aa)    
Predicted Functional Partners:
Pars_1983
KEGG: pai:PAE1635 hypothetical protein.
 
     0.923
Pars_1984
PFAM: putative RNA methylase; KEGG: pai:PAE1634 hypothetical protein.
 
     0.902
Pars_0603
KEGG: pai:PAE1451 hypothetical protein.
 
     0.667
Pars_1916
PFAM: von Willebrand factor, type A; VWA containing CoxE family protein; KEGG: pai:PAE2239 hypothetical protein.
  
     0.663
Pars_0126
PFAM: Methyltransferase type 11; KEGG: pis:Pisl_1163 methyltransferase type 11.
  
     0.650
Pars_1446
PFAM: MscS Mechanosensitive ion channel; KEGG: pai:PAE2422 potassium transport membrane protein, conjectural.
  
     0.644
Pars_1297
TIGRFAM: hydrogenase maturation protease; KEGG: pis:Pisl_0196 hydrogenase maturation protease.
  
     0.642
Pars_1800
KEGG: pai:PAE3057 P.aerophilum family 417, putative ATP binding.
  
     0.639
Pars_1899
Pullulanase; KEGG: pis:Pisl_0915 pullulanase.
  
     0.598
Pars_1950
SMART: helicase c2; KEGG: pai:PAE3526 hypothetical protein.
  
     0.594
Your Current Organism:
Pyrobaculum arsenaticum
NCBI taxonomy Id: 340102
Other names: P. arsenaticum DSM 13514, Pyrobaculum arsenaticum DSM 13514, Pyrobaculum arsenaticum str. DSM 13514, Pyrobaculum arsenaticum strain DSM 13514
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