STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Pars_2014PFAM: Protein of unknown function DUF429; KEGG: pai:PAE2091 hypothetical protein. (168 aa)    
Predicted Functional Partners:
Pars_2015
PFAM: NAD-dependent epimerase/dehydratase; short-chain dehydrogenase/reductase SDR; KR; KEGG: pai:PAE2089 short chain dehydrogenase family.
       0.578
Pars_1889
PFAM: protein of unknown function DUF72; KEGG: pis:Pisl_0905 protein of unknown function DUF72.
  
     0.558
Pars_0667
PFAM: protein of unknown function DUF6, transmembrane; KEGG: pai:PAE1545 hypothetical protein.
  
     0.439
Pars_2061
PFAM: peptidase, zinc-dependent; KEGG: pai:PAE1990 hypothetical protein.
  
     0.420
Your Current Organism:
Pyrobaculum arsenaticum
NCBI taxonomy Id: 340102
Other names: P. arsenaticum DSM 13514, Pyrobaculum arsenaticum DSM 13514, Pyrobaculum arsenaticum str. DSM 13514, Pyrobaculum arsenaticum strain DSM 13514
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.