STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Pars_2137PFAM: transport system permease protein; KEGG: pis:Pisl_1955 transport system permease protein. (307 aa)    
Predicted Functional Partners:
Pars_1285
PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: pis:Pisl_0214 ABC transporter related.
 
 
 0.994
Pars_1283
PFAM: periplasmic binding protein; KEGG: pis:Pisl_0216 periplasmic binding protein.
 
 
 0.945
Pars_0135
KEGG: pai:PAE0934 hypothetical protein.
  
 
 0.889
Pars_2136
PFAM: periplasmic binding protein; KEGG: pis:Pisl_1954 periplasmic binding protein.
 
     0.874
Pars_2138
PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: pis:Pisl_1956 ABC transporter related.
 
   
 0.838
Pars_1284
PFAM: transport system permease protein; KEGG: pis:Pisl_0215 transport system permease protein.
 
    
0.765
Pars_2141
KEGG: pai:PAE0329 putative thiamine transport system permease protein.
  
  
 0.540
fusA
Translation elongation factor 2 (EF-2/EF-G); Catalyzes the GTP-dependent ribosomal translocation step during translation elongation. During this step, the ribosome changes from the pre-translocational (PRE) to the post-translocational (POST) state as the newly formed A-site-bound peptidyl-tRNA and P-site-bound deacylated tRNA move to the P and E sites, respectively. Catalyzes the coordinated movement of the two tRNA molecules, the mRNA and conformational changes in the ribosome; Belongs to the TRAFAC class translation factor GTPase superfamily. Classic translation factor GTPase family. [...]
       0.418
Pars_1169
PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: pai:PAE0062 molybdenum transport system permease protein, putative.
   
  
 0.412
Your Current Organism:
Pyrobaculum arsenaticum
NCBI taxonomy Id: 340102
Other names: P. arsenaticum DSM 13514, Pyrobaculum arsenaticum DSM 13514, Pyrobaculum arsenaticum str. DSM 13514, Pyrobaculum arsenaticum strain DSM 13514
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