STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Cag_0175Ribulose-5-phosphate 3-epimerase; Belongs to the ribulose-phosphate 3-epimerase family. (218 aa)    
Predicted Functional Partners:
Cag_1437
Transketolase subunit A.
  
 0.996
Cag_1192
Transketolase subunit B.
 
 
 0.959
Cag_0901
Ribose-5-phosphate isomerase.
  
 
 0.928
Cag_1669
6-phosphogluconate dehydrogenase (decarboxylating).
     
 0.905
Cag_0176
Conserved hypothetical protein.
       0.632
metK
Methionine adenosyltransferase; Catalyzes the formation of S-adenosylmethionine (AdoMet) from methionine and ATP. The overall synthetic reaction is composed of two sequential steps, AdoMet formation and the subsequent tripolyphosphate hydrolysis which occurs prior to release of AdoMet from the enzyme.
 
 
 
 0.601
mtnA
Translation initiation factor 2B subunit I family (IF-2BI); Catalyzes the interconversion of methylthioribose-1-phosphate (MTR-1-P) into methylthioribulose-1-phosphate (MTRu-1-P).
  
   0.587
tal
Transaldolase; Transaldolase is important for the balance of metabolites in the pentose-phosphate pathway; Belongs to the transaldolase family. Type 3B subfamily.
 
 
 0.544
Cag_0467
KpsF/GutQ; Belongs to the SIS family. GutQ/KpsF subfamily.
  
  
 0.500
guaA
GMP synthase (glutamine-hydrolyzing); Catalyzes the synthesis of GMP from XMP.
  
  
 0.478
Your Current Organism:
Chlorobium chlorochromatii
NCBI taxonomy Id: 340177
Other names: C. chlorochromatii CaD3, Chlorobium chlorochromatii CaD3, Chlorobium chlorochromatii str. CaD3, Chlorobium chlorochromatii strain CaD3
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