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STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Cag_1908Cell division and transport-associated protein TolR; TC 2.C.1.2.1. (141 aa)    
Predicted Functional Partners:
Cag_1907
Cell division and transport-associated protein TolQ; TC 2.C.1.2.1.
 
 
 0.982
Cag_1909
Cell division and transport-associated protein TolA; TC 2.C.1.2.1.
 
 
 0.938
tolB
TolB protein, putative.
 
  
 0.923
pal-2
OmpA domain protein; Belongs to the Pal lipoprotein family.
 
 
 
 0.888
Cag_0549
Outer membrane transport energization protein ExbB; TC 2.C.1.1.1.
 
 
 0.772
pal
Outer membrane protein and related peptidoglycan-associated (lipo)proteins-like protein; Belongs to the Pal lipoprotein family.
 
 
 
 0.758
Cag_1698
Outer membrane protein and related peptidoglycan-associated (lipo)proteins-like protein.
 
 
 
 0.741
Cag_0552
Outer membrane transport energization protein TonB; TC 2.C.1.1.1.
  
 
 0.704
Cag_1912
TPR repeat.
 
  
 0.680
ribBA
GTP cyclohydrolase II; Catalyzes the conversion of D-ribulose 5-phosphate to formate and 3,4-dihydroxy-2-butanone 4-phosphate; In the C-terminal section; belongs to the GTP cyclohydrolase II family.
   
 
 0.558
Your Current Organism:
Chlorobium chlorochromatii
NCBI taxonomy Id: 340177
Other names: C. chlorochromatii CaD3, Chlorobium chlorochromatii CaD3, Chlorobium chlorochromatii str. CaD3, Chlorobium chlorochromatii strain CaD3
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