Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
Cag_2000DNA-binding protein Fis / transcriptional regulator, Fis family. (700 aa)    
Predicted Functional Partners:
Cag_1539
PAS/PAC sensor signal transduction histidine kinase.
  
 
 0.955
Cag_0781
RNA polymerase, sigma 54 subunit, RpoN/SigL.
 
   
 0.833
Cag_0789
Periplasmic sensor hybrid histidine kinase.
 
 
 
 0.820
Cag_0562
Putative PAS/PAC sensor protein.
   
 
 0.811
Cag_0563
Putative PAS/PAC sensor protein.
  
 
 0.588
Cag_2001
Hypothetical protein.
       0.528
Cag_1999
Ammonium transporter.
     
 0.500
Cag_0186
Glutamate synthase (NADH) large subunit.
     
 0.486
Cag_1998
Nitrogen regulatory protein P-II.
  
  
 0.476
Cag_1331
DNA-binding protein Fis.
 
 
 
0.439
Your Current Organism:
Chlorobium chlorochromatii
NCBI taxonomy Id: 340177
Other names: C. chlorochromatii CaD3, Chlorobium chlorochromatii CaD3, Chlorobium chlorochromatii str. CaD3, Chlorobium chlorochromatii strain CaD3
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