Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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Neighborhood
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Co-occurrence
Co-expression
Experiments
Databases
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[Homology]
Score
Cag_2016Muramoyltetrapeptide carboxypeptidase, putative. (318 aa)    
Predicted Functional Partners:
Cag_2017
Hypothetical protein; Belongs to the ClpS family.
       0.747
Cag_0477
D-alanyl-D-alanine carboxypeptidease, putative.
 
     0.578
Cag_1164
Peptidoglycan glycosyltransferase.
 
  
 0.569
Cag_2015
ATP synthase F1 subcomplex epsilon subunit.
       0.519
atpD
ATP synthase F1 subcomplex beta subunit; Produces ATP from ADP in the presence of a proton gradient across the membrane. The catalytic sites are hosted primarily by the beta subunits; Belongs to the ATPase alpha/beta chains family.
       0.496
Cag_2018
Conserved hypothetical protein.
       0.444
Your Current Organism:
Chlorobium chlorochromatii
NCBI taxonomy Id: 340177
Other names: C. chlorochromatii CaD3, Chlorobium chlorochromatii CaD3, Chlorobium chlorochromatii str. CaD3, Chlorobium chlorochromatii strain CaD3
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