SIP89651.1 protein (Aromatoleum tolulyticum)

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Known Interactions

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Predicted Interactions

gene neighborhood

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[Homology]

Score

SIP89651.1

Uncharacterized membrane protein YqjE. (127 aa)

Predicted Functional Partners:

SIP89624.1

0.943

SIP89676.1

0.773

SIR07394.1

0.759

coq7

0.608

SIQ86911.1

0.511

SIP89698.1

0.506

SIQ21802.1

0.497

SIP89730.1

0.496

SIP89598.1

0.495

SIQ21828.1

0.482

Your Current Organism:

Aromatoleum tolulyticum

NCBI taxonomy Id: 34027
Other names: A. tolulyticum, ATCC 51758, Azoarcus denitrificans, Azoarcus tolulyticus, CIP 109470, strain Tol-4

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Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
SIP89598.1	SIP89624.1	SAMN05421829_101225	SAMN05421829_101226	Predicted O-linked N-acetylglucosamine transferase, SPINDLY family.	Membrane-anchored ribosome-binding protein, inhibits growth in stationary phase, ElaB/YqjD/DUF883 family.	0.495
SIP89598.1	SIP89651.1	SAMN05421829_101225	SAMN05421829_101227	Predicted O-linked N-acetylglucosamine transferase, SPINDLY family.	Uncharacterized membrane protein YqjE.	0.495
SIP89598.1	SIP89676.1	SAMN05421829_101225	SAMN05421829_101228	Predicted O-linked N-acetylglucosamine transferase, SPINDLY family.	YqjK-like protein.	0.495
SIP89624.1	SIP89598.1	SAMN05421829_101226	SAMN05421829_101225	Membrane-anchored ribosome-binding protein, inhibits growth in stationary phase, ElaB/YqjD/DUF883 family.	Predicted O-linked N-acetylglucosamine transferase, SPINDLY family.	0.495
SIP89624.1	SIP89651.1	SAMN05421829_101226	SAMN05421829_101227	Membrane-anchored ribosome-binding protein, inhibits growth in stationary phase, ElaB/YqjD/DUF883 family.	Uncharacterized membrane protein YqjE.	0.943
SIP89624.1	SIP89676.1	SAMN05421829_101226	SAMN05421829_101228	Membrane-anchored ribosome-binding protein, inhibits growth in stationary phase, ElaB/YqjD/DUF883 family.	YqjK-like protein.	0.773
SIP89624.1	SIP89698.1	SAMN05421829_101226	SAMN05421829_101229	Membrane-anchored ribosome-binding protein, inhibits growth in stationary phase, ElaB/YqjD/DUF883 family.	Hypoxanthine phosphoribosyltransferase.	0.506
SIP89624.1	SIP89730.1	SAMN05421829_101226	SAMN05421829_101230	Membrane-anchored ribosome-binding protein, inhibits growth in stationary phase, ElaB/YqjD/DUF883 family.	Protein of unknown function.	0.496
SIP89624.1	SIQ21802.1	SAMN05421829_101226	SAMN05421829_10326	Membrane-anchored ribosome-binding protein, inhibits growth in stationary phase, ElaB/YqjD/DUF883 family.	Hypothetical protein; Belongs to the UPF0229 family.	0.497
SIP89624.1	SIQ21828.1	SAMN05421829_101226	SAMN05421829_10327	Membrane-anchored ribosome-binding protein, inhibits growth in stationary phase, ElaB/YqjD/DUF883 family.	Stage V sporulation protein SpoVR/YcgB, involved in spore cortex formation.	0.596
SIP89651.1	SIP89598.1	SAMN05421829_101227	SAMN05421829_101225	Uncharacterized membrane protein YqjE.	Predicted O-linked N-acetylglucosamine transferase, SPINDLY family.	0.495
SIP89651.1	SIP89624.1	SAMN05421829_101227	SAMN05421829_101226	Uncharacterized membrane protein YqjE.	Membrane-anchored ribosome-binding protein, inhibits growth in stationary phase, ElaB/YqjD/DUF883 family.	0.943
SIP89651.1	SIP89676.1	SAMN05421829_101227	SAMN05421829_101228	Uncharacterized membrane protein YqjE.	YqjK-like protein.	0.773
SIP89651.1	SIP89698.1	SAMN05421829_101227	SAMN05421829_101229	Uncharacterized membrane protein YqjE.	Hypoxanthine phosphoribosyltransferase.	0.506
SIP89651.1	SIP89730.1	SAMN05421829_101227	SAMN05421829_101230	Uncharacterized membrane protein YqjE.	Protein of unknown function.	0.496
SIP89651.1	SIQ21802.1	SAMN05421829_101227	SAMN05421829_10326	Uncharacterized membrane protein YqjE.	Hypothetical protein; Belongs to the UPF0229 family.	0.497
SIP89651.1	SIQ21828.1	SAMN05421829_101227	SAMN05421829_10327	Uncharacterized membrane protein YqjE.	Stage V sporulation protein SpoVR/YcgB, involved in spore cortex formation.	0.482
SIP89651.1	SIQ86911.1	SAMN05421829_101227	SAMN05421829_107181	Uncharacterized membrane protein YqjE.	Alternative oxidase.	0.511
SIP89651.1	SIR07394.1	SAMN05421829_101227	SAMN05421829_109165	Uncharacterized membrane protein YqjE.	Membrane-anchored ribosome-binding protein, inhibits growth in stationary phase, ElaB/YqjD/DUF883 family.	0.759
SIP89651.1	coq7	SAMN05421829_101227	SAMN05421829_10410	Uncharacterized membrane protein YqjE.	Ubiquinone biosynthesis monooxygenase Coq7; Catalyzes the hydroxylation of 2-nonaprenyl-3-methyl-6- methoxy-1,4-benzoquinol during ubiquinone biosynthesis.	0.608

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Network Stats

number of nodes:

11

number of edges:

52

average node degree:

9.45

avg. local clustering coefficient:

0.958

expected number of edges:

20

PPI enrichment p-value:

2.86e-09

your network has significantly more interactions
than expected (what does that mean?)

Functional enrichments in your networkNote: some enrichments may be expected here (why?)
disable highlight explain columns

Biological Process (Gene Ontology)

GO-term

description

count in network

strength

signal

false discovery rate

GO:0007165

Signal transduction

6 of 62

1.51

1.91

6.21e-06

GO:0000160

Phosphorelay signal transduction system

5 of 52

1.51

1.66

5.65e-05

GO:0050794

Regulation of cellular process

9 of 253

1.08

1.24

2.38e-06

Molecular Function (Gene Ontology)

GO-term

description

count in network

strength

signal

false discovery rate

GO:0004673

Protein histidine kinase activity

5 of 25

1.83

2.27

8.43e-06

GO:0000155

Phosphorelay sensor kinase activity

4 of 24

1.75

1.79

0.00011

GO:0016772

Transferase activity, transferring phosphorus-containing groups

7 of 171

1.14

1.22

2.82e-05

GO:0016740

Transferase activity

9 of 591

0.71

0.61

0.00028

Cellular Component (Gene Ontology)

GO-term

description

count in network

strength

signal

false discovery rate

GO:0005886

Plasma membrane

7 of 579

0.61

0.36

0.0471

GO:0016021

Integral component of membrane

8 of 769

0.54

0.33

0.0471

GO:0016020

Membrane

9 of 1176

0.41

0.28

0.0471

Local Network Cluster (STRING)

cluster

description

count in network

strength

signal

false discovery rate

CL:2148

Phosphorelay signal transduction system, and RNA polymerase sigma factor 54 interaction domain

11 of 41

1.96

6.07

1.09e-18

CL:2155

Mixed, incl. PAS domain, and Phosphoric diester hydrolase activity

8 of 21

2.11

5.5

6.46e-14

CL:2161

PAS-associated, C-terminal, and Bacterial chemotaxis

6 of 10

2.31

4.88

6.39e-11

CL:2163

Diguanylate cyclase, and Regulation of signaling

3 of 5

2.31

2.21

5.90e-05

CL:2215

Sigma-54 interaction domain, ATP-binding site 1, and PAS fold

3 of 7

2.16

2.01

0.00012

KEGG Pathways

pathway

description

count in network

strength

signal

false discovery rate

map02020

Two-component system

10 of 277

1.08

1.42

8.29e-09

Annotated Keywords (UniProt)

keyword

description

count in network

strength

signal

false discovery rate

KW-0418

Kinase

4 of 74

1.26

0.79

0.0122

Protein Domains and Features (InterPro)

domain

description

count in network

strength

signal

false discovery rate

IPR001610

PAC motif

4 of 8

2.23

2.3

3.24e-05

IPR035965

PAS domain superfamily

4 of 10

2.13

2.26

3.27e-05

IPR000014

PAS domain

4 of 10

2.13

2.26

3.27e-05

IPR004358

Signal transduction histidine kinase-related protein, C-terminal

4 of 17

1.9

1.92

9.67e-05

IPR005467

Histidine kinase domain

4 of 20

1.83

1.81

0.00014

(more ...)

Protein Domains (SMART)

domain

description

count in network

strength

signal

false discovery rate

SM00086

Motif C-terminal to PAS motifs (likely to contribute to PAS structural domain)

4 of 9

2.17

2.71

3.74e-06

SM00091

PAS domain

4 of 11

2.09

2.64

3.74e-06

SM00388

His Kinase A (phosphoacceptor) domain

4 of 17

1.9

2.31

1.03e-05

SM00387

Histidine kinase-like ATPases

4 of 22

1.79

2.1

1.92e-05

SM00065

Domain present in phytochromes and cGMP-specific phosphodiesterases.

2 of 5

2.13

1.25

0.0042

(more ...)

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