Export your current network:
... as a bitmap image:
file format is 'PNG': portable network graphic
... as a high-resolution bitmap:
same PNG format, but at higher resolution
... as a vector graphic:
SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc
... as short tabular text output:
TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)
... as tabular text output:
TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)
... as an XML summary:
structured XML interaction data, according to the 'PSI-MI' data standard
... protein node degrees:
node degree of proteins in your network (given the current score cut-off)
... network coordinates:
a flat-file format describing the coordinates and colors of nodes in the network
... protein sequences:
MFA: multi-fasta format - containing the aminoacid sequences in the network
... protein annotations:
a tab-delimited file describing the names, domains and descriptions of proteins in your network
... functional annotations:
a tab-delimited file containing all known functional terms of protiens in your network
Browse interactions in tabular form:
node1 | node2 | node1 accession | node2 accession | node1 annotation | node2 annotation | score |
SIQ08045.1 | SIQ10671.1 | SAMN05421829_102207 | SAMN05421829_102309 | Carbon starvation protein. | Hypothetical protein. | 0.717 |
SIQ08045.1 | SIQ43909.1 | SAMN05421829_102207 | SAMN05421829_104199 | Carbon starvation protein. | L-proline dehydrogenase; Oxidizes proline to glutamate for use as a carbon and nitrogen source; In the C-terminal section; belongs to the aldehyde dehydrogenase family. | 0.655 |
SIQ08045.1 | SIQ59055.1 | SAMN05421829_102207 | SAMN05421829_105174 | Carbon starvation protein. | Citrate synthase. | 0.429 |
SIQ08045.1 | SIQ62886.1 | SAMN05421829_102207 | SAMN05421829_105299 | Carbon starvation protein. | Citrate synthase; Belongs to the citrate synthase family. | 0.429 |
SIQ08045.1 | pxpA | SAMN05421829_102207 | SAMN05421829_103362 | Carbon starvation protein. | UPF0271 protein; Catalyzes the cleavage of 5-oxoproline to form L-glutamate coupled to the hydrolysis of ATP to ADP and inorganic phosphate. | 0.543 |
SIQ10671.1 | SIQ08045.1 | SAMN05421829_102309 | SAMN05421829_102207 | Hypothetical protein. | Carbon starvation protein. | 0.717 |
SIQ10671.1 | SIQ43909.1 | SAMN05421829_102309 | SAMN05421829_104199 | Hypothetical protein. | L-proline dehydrogenase; Oxidizes proline to glutamate for use as a carbon and nitrogen source; In the C-terminal section; belongs to the aldehyde dehydrogenase family. | 0.976 |
SIQ10671.1 | SIQ59055.1 | SAMN05421829_102309 | SAMN05421829_105174 | Hypothetical protein. | Citrate synthase. | 0.478 |
SIQ10671.1 | SIQ62886.1 | SAMN05421829_102309 | SAMN05421829_105299 | Hypothetical protein. | Citrate synthase; Belongs to the citrate synthase family. | 0.478 |
SIQ10671.1 | pxpA | SAMN05421829_102309 | SAMN05421829_103362 | Hypothetical protein. | UPF0271 protein; Catalyzes the cleavage of 5-oxoproline to form L-glutamate coupled to the hydrolysis of ATP to ADP and inorganic phosphate. | 0.616 |
SIQ32265.1 | SIQ32303.1 | SAMN05421829_103363 | SAMN05421829_103364 | Biotin-dependent carboxylase uncharacterized domain-containing protein. | Sensor histidine kinase inhibitor, KipI family. | 0.999 |
SIQ32265.1 | SIQ32338.1 | SAMN05421829_103363 | SAMN05421829_103365 | Biotin-dependent carboxylase uncharacterized domain-containing protein. | Predicted arabinose efflux permease, MFS family. | 0.589 |
SIQ32265.1 | SIQ32373.1 | SAMN05421829_103363 | SAMN05421829_103366 | Biotin-dependent carboxylase uncharacterized domain-containing protein. | Uncharacterized protein YcsI, UPF0317 family; Belongs to the D-glutamate cyclase family. | 0.939 |
SIQ32265.1 | SIQ43909.1 | SAMN05421829_103363 | SAMN05421829_104199 | Biotin-dependent carboxylase uncharacterized domain-containing protein. | L-proline dehydrogenase; Oxidizes proline to glutamate for use as a carbon and nitrogen source; In the C-terminal section; belongs to the aldehyde dehydrogenase family. | 0.825 |
SIQ32265.1 | SIQ47317.1 | SAMN05421829_103363 | SAMN05421829_104295 | Biotin-dependent carboxylase uncharacterized domain-containing protein. | Dinuclear metal center protein, YbgI/SA1388 family. | 0.762 |
SIQ32265.1 | pxpA | SAMN05421829_103363 | SAMN05421829_103362 | Biotin-dependent carboxylase uncharacterized domain-containing protein. | UPF0271 protein; Catalyzes the cleavage of 5-oxoproline to form L-glutamate coupled to the hydrolysis of ATP to ADP and inorganic phosphate. | 0.999 |
SIQ32303.1 | SIQ32265.1 | SAMN05421829_103364 | SAMN05421829_103363 | Sensor histidine kinase inhibitor, KipI family. | Biotin-dependent carboxylase uncharacterized domain-containing protein. | 0.999 |
SIQ32303.1 | SIQ32338.1 | SAMN05421829_103364 | SAMN05421829_103365 | Sensor histidine kinase inhibitor, KipI family. | Predicted arabinose efflux permease, MFS family. | 0.589 |
SIQ32303.1 | SIQ32373.1 | SAMN05421829_103364 | SAMN05421829_103366 | Sensor histidine kinase inhibitor, KipI family. | Uncharacterized protein YcsI, UPF0317 family; Belongs to the D-glutamate cyclase family. | 0.940 |
SIQ32303.1 | SIQ43909.1 | SAMN05421829_103364 | SAMN05421829_104199 | Sensor histidine kinase inhibitor, KipI family. | L-proline dehydrogenase; Oxidizes proline to glutamate for use as a carbon and nitrogen source; In the C-terminal section; belongs to the aldehyde dehydrogenase family. | 0.804 |
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