STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SIQ23804.1Collagenase-like protease, PrtC family. (352 aa)    
Predicted Functional Partners:
SIR49631.1
Collagenase-like protease, PrtC family.
 
 
 0.825
SIP91035.1
Putative protease.
  
     0.775
SIR49650.1
Putative protease.
  
     0.774
SIQ23830.1
Hypothetical protein.
       0.773
SIQ23869.1
Subtilase family protein.
       0.773
SIQ23898.1
ATP-binding cassette, subfamily B.
       0.773
SIR31921.1
Putative protease.
  
     0.765
SIQ23994.1
Uncharacterized protein.
 
     0.500
SIR49606.1
Predicted lipid carrier protein YhbT, contains SCP2 domain.
 
  
 0.473
SIQ28014.1
Oxygen-independent coproporphyrinogen-3 oxidase; Belongs to the anaerobic coproporphyrinogen-III oxidase family.
 
    0.470
Your Current Organism:
Aromatoleum tolulyticum
NCBI taxonomy Id: 34027
Other names: A. tolulyticum, ATCC 51758, Azoarcus denitrificans, Azoarcus tolulyticus, CIP 109470, strain Tol-4
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