Export your current network:
... as a bitmap image:
file format is 'PNG': portable network graphic
... as a high-resolution bitmap:
same PNG format, but at higher resolution
... as a vector graphic:
SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc
... as short tabular text output:
TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)
... as tabular text output:
TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)
... as an XML summary:
structured XML interaction data, according to the 'PSI-MI' data standard
... protein node degrees:
node degree of proteins in your network (given the current score cut-off)
... network coordinates:
a flat-file format describing the coordinates and colors of nodes in the network
... protein sequences:
MFA: multi-fasta format - containing the aminoacid sequences in the network
... protein annotations:
a tab-delimited file describing the names, domains and descriptions of proteins in your network
... functional annotations:
a tab-delimited file containing all known functional terms of protiens in your network
Browse interactions in tabular form:
node1 | node2 | node1 accession | node2 accession | node1 annotation | node2 annotation | score |
SIP94672.1 | SIQ04818.1 | SAMN05421829_101423 | SAMN05421829_10289 | DNA topoisomerase-3. | RecF/RecN/SMC N terminal domain-containing protein. | 0.830 |
SIP94672.1 | SIQ81360.1 | SAMN05421829_101423 | SAMN05421829_10720 | DNA topoisomerase-3. | ATP-dependent DNA helicase RecQ. | 0.993 |
SIP94672.1 | SIQ84893.1 | SAMN05421829_101423 | SAMN05421829_107124 | DNA topoisomerase-3. | DNA topoisomerase-3. | 0.455 |
SIP94672.1 | SIQ86120.1 | SAMN05421829_101423 | SAMN05421829_107159 | DNA topoisomerase-3. | DNA polymerase III, beta subunit; Confers DNA tethering and processivity to DNA polymerases and other proteins. Acts as a clamp, forming a ring around DNA (a reaction catalyzed by the clamp-loading complex) which diffuses in an ATP- independent manner freely and bidirectionally along dsDNA. Initially characterized for its ability to contact the catalytic subunit of DNA polymerase III (Pol III), a complex, multichain enzyme responsible for most of the replicative synthesis in bacteria; Pol III exhibits 3'-5' exonuclease proofreading activity. The beta chain is required for initiation of [...] | 0.777 |
SIP94672.1 | SIR38251.1 | SAMN05421829_101423 | SAMN05421829_11450 | DNA topoisomerase-3. | Exonuclease SbcC. | 0.852 |
SIP94672.1 | mutL | SAMN05421829_101423 | SAMN05421829_103357 | DNA topoisomerase-3. | DNA mismatch repair protein MutL; This protein is involved in the repair of mismatches in DNA. It is required for dam-dependent methyl-directed DNA mismatch repair. May act as a 'molecular matchmaker', a protein that promotes the formation of a stable complex between two or more DNA-binding proteins in an ATP-dependent manner without itself being part of a final effector complex. | 0.571 |
SIP94672.1 | mutS | SAMN05421829_101423 | SAMN05421829_10948 | DNA topoisomerase-3. | DNA mismatch repair protein MutS; This protein is involved in the repair of mismatches in DNA. It is possible that it carries out the mismatch recognition step. This protein has a weak ATPase activity. | 0.777 |
SIP94672.1 | polA | SAMN05421829_101423 | SAMN05421829_11381 | DNA topoisomerase-3. | DNA polymerase I; In addition to polymerase activity, this DNA polymerase exhibits 5'-3' exonuclease activity; Belongs to the DNA polymerase type-A family. | 0.847 |
SIP94672.1 | recA | SAMN05421829_101423 | SAMN05421829_101193 | DNA topoisomerase-3. | Recombination protein RecA; Can catalyze the hydrolysis of ATP in the presence of single- stranded DNA, the ATP-dependent uptake of single-stranded DNA by duplex DNA, and the ATP-dependent hybridization of homologous single-stranded DNAs. It interacts with LexA causing its activation and leading to its autocatalytic cleavage; Belongs to the RecA family. | 0.876 |
SIP94672.1 | sbcD | SAMN05421829_101423 | SAMN05421829_11451 | DNA topoisomerase-3. | Exodeoxyribonuclease I subunit D; SbcCD cleaves DNA hairpin structures. These structures can inhibit DNA replication and are intermediates in certain DNA recombination reactions. The complex acts as a 3'->5' double strand exonuclease that can open hairpins. It also has a 5' single-strand endonuclease activity; Belongs to the SbcD family. | 0.760 |
SIQ04818.1 | SIP94672.1 | SAMN05421829_10289 | SAMN05421829_101423 | RecF/RecN/SMC N terminal domain-containing protein. | DNA topoisomerase-3. | 0.830 |
SIQ04818.1 | SIQ81360.1 | SAMN05421829_10289 | SAMN05421829_10720 | RecF/RecN/SMC N terminal domain-containing protein. | ATP-dependent DNA helicase RecQ. | 0.986 |
SIQ04818.1 | SIQ84893.1 | SAMN05421829_10289 | SAMN05421829_107124 | RecF/RecN/SMC N terminal domain-containing protein. | DNA topoisomerase-3. | 0.767 |
SIQ04818.1 | SIQ86120.1 | SAMN05421829_10289 | SAMN05421829_107159 | RecF/RecN/SMC N terminal domain-containing protein. | DNA polymerase III, beta subunit; Confers DNA tethering and processivity to DNA polymerases and other proteins. Acts as a clamp, forming a ring around DNA (a reaction catalyzed by the clamp-loading complex) which diffuses in an ATP- independent manner freely and bidirectionally along dsDNA. Initially characterized for its ability to contact the catalytic subunit of DNA polymerase III (Pol III), a complex, multichain enzyme responsible for most of the replicative synthesis in bacteria; Pol III exhibits 3'-5' exonuclease proofreading activity. The beta chain is required for initiation of [...] | 0.583 |
SIQ04818.1 | polA | SAMN05421829_10289 | SAMN05421829_11381 | RecF/RecN/SMC N terminal domain-containing protein. | DNA polymerase I; In addition to polymerase activity, this DNA polymerase exhibits 5'-3' exonuclease activity; Belongs to the DNA polymerase type-A family. | 0.980 |
SIQ04818.1 | recA | SAMN05421829_10289 | SAMN05421829_101193 | RecF/RecN/SMC N terminal domain-containing protein. | Recombination protein RecA; Can catalyze the hydrolysis of ATP in the presence of single- stranded DNA, the ATP-dependent uptake of single-stranded DNA by duplex DNA, and the ATP-dependent hybridization of homologous single-stranded DNAs. It interacts with LexA causing its activation and leading to its autocatalytic cleavage; Belongs to the RecA family. | 0.825 |
SIQ04818.1 | sbcD | SAMN05421829_10289 | SAMN05421829_11451 | RecF/RecN/SMC N terminal domain-containing protein. | Exodeoxyribonuclease I subunit D; SbcCD cleaves DNA hairpin structures. These structures can inhibit DNA replication and are intermediates in certain DNA recombination reactions. The complex acts as a 3'->5' double strand exonuclease that can open hairpins. It also has a 5' single-strand endonuclease activity; Belongs to the SbcD family. | 0.998 |
SIQ81360.1 | SIP94672.1 | SAMN05421829_10720 | SAMN05421829_101423 | ATP-dependent DNA helicase RecQ. | DNA topoisomerase-3. | 0.993 |
SIQ81360.1 | SIQ04818.1 | SAMN05421829_10720 | SAMN05421829_10289 | ATP-dependent DNA helicase RecQ. | RecF/RecN/SMC N terminal domain-containing protein. | 0.986 |
SIQ81360.1 | SIQ84893.1 | SAMN05421829_10720 | SAMN05421829_107124 | ATP-dependent DNA helicase RecQ. | DNA topoisomerase-3. | 0.991 |
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