STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SIR47088.1ABC transporter substrate binding protein. (315 aa)    
Predicted Functional Partners:
SIR47071.1
Signal transduction histidine kinase.
 
     0.838
SIR48786.1
Response regulator receiver domain-containing protein.
    
  0.822
SIQ70916.1
PAS domain S-box-containing protein.
    
  0.818
SIR48722.1
Hypothetical protein.
    
  0.818
SIQ94909.1
Iron complex outermembrane recepter protein.
 
     0.766
SIQ08164.1
PAS domain S-box-containing protein.
    
  0.756
SIR04142.1
PAS domain S-box-containing protein.
    
  0.756
SIR48822.1
PAS domain S-box-containing protein.
    
  0.756
SIR14585.1
Iron complex outermembrane recepter protein.
 
     0.747
SIP90088.1
Iron complex outermembrane recepter protein.
 
   
 0.740
Your Current Organism:
Aromatoleum tolulyticum
NCBI taxonomy Id: 34027
Other names: A. tolulyticum, ATCC 51758, Azoarcus denitrificans, Azoarcus tolulyticus, CIP 109470, strain Tol-4
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