STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SIR55541.1Siderophore synthetase component. (609 aa)    
Predicted Functional Partners:
SIR55560.1
Predicted arabinose efflux permease, MFS family.
  
 0.985
SIR55521.1
Diaminopimelate decarboxylase; Belongs to the Orn/Lys/Arg decarboxylase class-II family.
 
 0.968
SIR55601.1
Biotin carboxylase.
 
     0.944
SIR55497.1
4-hydroxy-2-oxoheptanedioate aldolase; Belongs to the HpcH/HpaI aldolase family.
 
    0.891
SIR55579.1
Siderophore synthetase component.
 
   
0.854
SIQ61225.1
Acetyltransferase.
  
 
 0.686
SIR42703.1
Acetyltransferase.
  
 
 0.686
SIR49282.1
Protein of unknown function.
  
 
 0.686
SIR17099.1
1-acyl-sn-glycerol-3-phosphate acyltransferases.
  
 
 0.566
SIR55620.1
Type II secretory pathway, pseudopilin PulG.
 
     0.527
Your Current Organism:
Aromatoleum tolulyticum
NCBI taxonomy Id: 34027
Other names: A. tolulyticum, ATCC 51758, Azoarcus denitrificans, Azoarcus tolulyticus, CIP 109470, strain Tol-4
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