SIR57112.1 protein (Aromatoleum tolulyticum)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:

Neighborhood

Gene Fusion

Cooccurrence

Coexpression

Experiments

Databases

Textmining

[Homology]

Score

SIR57112.1

Nucleoid-associated protein. (337 aa)

Predicted Functional Partners:

SIQ83605.1

0.607

SIR57132.1

0.580

SIR23360.1

0.567

SIR53455.1

0.530

SIR57520.1

0.496

SIQ03235.1

0.490

SIQ82859.1

0.485

SIQ91721.1

0.473

rlmM

0.437

SIR14992.1

0.423

Your Current Organism:

Aromatoleum tolulyticum

NCBI taxonomy Id: 34027
Other names: A. tolulyticum, ATCC 51758, Azoarcus denitrificans, Azoarcus tolulyticus, CIP 109470, strain Tol-4

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
SIQ03235.1	SIQ82859.1	SAMN05421829_10225	SAMN05421829_10764	Protein of unknown function.	Hypothetical protein.	0.676
SIQ03235.1	SIQ91721.1	SAMN05421829_10225	SAMN05421829_10816	Protein of unknown function.	HD-like signal output (HDOD) domain, no enzymatic activity.	0.542
SIQ03235.1	SIR23360.1	SAMN05421829_10225	SAMN05421829_111152	Protein of unknown function.	Twitching motility protein PilI.	0.754
SIQ03235.1	SIR57112.1	SAMN05421829_10225	SAMN05421829_12111	Protein of unknown function.	Nucleoid-associated protein.	0.490
SIQ03235.1	SIR57520.1	SAMN05421829_10225	SAMN05421829_12133	Protein of unknown function.	Dynamin family protein.	0.655
SIQ82859.1	SIQ03235.1	SAMN05421829_10764	SAMN05421829_10225	Hypothetical protein.	Protein of unknown function.	0.676
SIQ82859.1	SIQ91721.1	SAMN05421829_10764	SAMN05421829_10816	Hypothetical protein.	HD-like signal output (HDOD) domain, no enzymatic activity.	0.764
SIQ82859.1	SIR23360.1	SAMN05421829_10764	SAMN05421829_111152	Hypothetical protein.	Twitching motility protein PilI.	0.756
SIQ82859.1	SIR57112.1	SAMN05421829_10764	SAMN05421829_12111	Hypothetical protein.	Nucleoid-associated protein.	0.485
SIQ82859.1	SIR57520.1	SAMN05421829_10764	SAMN05421829_12133	Hypothetical protein.	Dynamin family protein.	0.732
SIQ83605.1	SIR57112.1	SAMN05421829_10785	SAMN05421829_12111	Uncharacterized membrane protein YhaH, DUF805 family.	Nucleoid-associated protein.	0.607
SIQ91721.1	SIQ03235.1	SAMN05421829_10816	SAMN05421829_10225	HD-like signal output (HDOD) domain, no enzymatic activity.	Protein of unknown function.	0.542
SIQ91721.1	SIQ82859.1	SAMN05421829_10816	SAMN05421829_10764	HD-like signal output (HDOD) domain, no enzymatic activity.	Hypothetical protein.	0.764
SIQ91721.1	SIR23360.1	SAMN05421829_10816	SAMN05421829_111152	HD-like signal output (HDOD) domain, no enzymatic activity.	Twitching motility protein PilI.	0.728
SIQ91721.1	SIR57112.1	SAMN05421829_10816	SAMN05421829_12111	HD-like signal output (HDOD) domain, no enzymatic activity.	Nucleoid-associated protein.	0.473
SIQ91721.1	SIR57520.1	SAMN05421829_10816	SAMN05421829_12133	HD-like signal output (HDOD) domain, no enzymatic activity.	Dynamin family protein.	0.650
SIR14992.1	SIR57112.1	SAMN05421829_110118	SAMN05421829_12111	Arginine succinyltransferase.	Nucleoid-associated protein.	0.423
SIR23360.1	SIQ03235.1	SAMN05421829_111152	SAMN05421829_10225	Twitching motility protein PilI.	Protein of unknown function.	0.754
SIR23360.1	SIQ82859.1	SAMN05421829_111152	SAMN05421829_10764	Twitching motility protein PilI.	Hypothetical protein.	0.756
SIR23360.1	SIQ91721.1	SAMN05421829_111152	SAMN05421829_10816	Twitching motility protein PilI.	HD-like signal output (HDOD) domain, no enzymatic activity.	0.728