Export your current network:
... as a vector graphic:
SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc
... as short tabular text output:
TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)
... as tabular text output:
TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)
... as an XML summary:
structured XML interaction data, according to the 'PSI-MI' data standard
... protein node degrees:
node degree of proteins in your network (given the current score cut-off)
... network coordinates:
a flat-file format describing the coordinates and colors of nodes in the network
... protein sequences:
MFA: multi-fasta format - containing the aminoacid sequences in the network
... protein annotations:
a tab-delimited file describing the names, domains and descriptions of proteins in your network
... functional annotations:
a tab-delimited file containing all known functional terms of protiens in your network
Browse interactions in tabular form:
| node1 | node2 | node1 accession | node2 accession | node1 annotation | node2 annotation | score |
| AOS61192.1 | AOS61193.1 | TL08_01765 | TL08_01770 | Hypothetical protein. | A/G-specific DNA-adenine glycosylase. | 0.688 |
| AOS61193.1 | AOS61192.1 | TL08_01770 | TL08_01765 | A/G-specific DNA-adenine glycosylase. | Hypothetical protein. | 0.688 |
| AOS61193.1 | AOS64954.1 | TL08_01770 | TL08_20815 | A/G-specific DNA-adenine glycosylase. | DNA polymerase III epsilon subunit-like 3'-5' exonuclease. | 0.526 |
| AOS61193.1 | AOS65671.1 | TL08_01770 | TL08_24465 | A/G-specific DNA-adenine glycosylase. | Exodeoxyribonuclease III. | 0.894 |
| AOS61193.1 | AOS65890.1 | TL08_01770 | TL08_25585 | A/G-specific DNA-adenine glycosylase. | DNA-3-methyladenine glycosylase I. | 0.584 |
| AOS61193.1 | mutM | TL08_01770 | TL08_22380 | A/G-specific DNA-adenine glycosylase. | DNA-(apurinic or apyrimidinic site) lyase; Involved in base excision repair of DNA damaged by oxidation or by mutagenic agents. Acts as DNA glycosylase that recognizes and removes damaged bases. Has a preference for oxidized purines, such as 7,8-dihydro-8-oxoguanine (8-oxoG). Has AP (apurinic/apyrimidinic) lyase activity and introduces nicks in the DNA strand. Cleaves the DNA backbone by beta-delta elimination to generate a single-strand break at the site of the removed base with both 3'- and 5'-phosphates. | 0.741 |
| AOS61193.1 | nth | TL08_01770 | TL08_01295 | A/G-specific DNA-adenine glycosylase. | Endonuclease III; DNA repair enzyme that has both DNA N-glycosylase activity and AP-lyase activity. The DNA N-glycosylase activity releases various damaged pyrimidines from DNA by cleaving the N-glycosidic bond, leaving an AP (apurinic/apyrimidinic) site. The AP-lyase activity cleaves the phosphodiester bond 3' to the AP site by a beta-elimination, leaving a 3'-terminal unsaturated sugar and a product with a terminal 5'- phosphate. | 0.683 |
| AOS61193.1 | radA | TL08_01770 | TL08_01780 | A/G-specific DNA-adenine glycosylase. | DNA repair protein RadA; DNA-dependent ATPase involved in processing of recombination intermediates, plays a role in repairing DNA breaks. Stimulates the branch migration of RecA-mediated strand transfer reactions, allowing the 3' invading strand to extend heteroduplex DNA faster. Binds ssDNA in the presence of ADP but not other nucleotides, has ATPase activity that is stimulated by ssDNA and various branched DNA structures, but inhibited by SSB. Does not have RecA's homology-searching function. | 0.546 |
| AOS61193.1 | recO | TL08_01770 | TL08_21345 | A/G-specific DNA-adenine glycosylase. | DNA replication and repair protein RecO; Involved in DNA repair and RecF pathway recombination. | 0.723 |
| AOS61193.1 | ung | TL08_01770 | TL08_22535 | A/G-specific DNA-adenine glycosylase. | Uracil-DNA glycosylase; Excises uracil residues from the DNA which can arise as a result of misincorporation of dUMP residues by DNA polymerase or due to deamination of cytosine. | 0.534 |
| AOS61193.1 | uvrB | TL08_01770 | TL08_10280 | A/G-specific DNA-adenine glycosylase. | Excinuclease ABC subunit B; The UvrABC repair system catalyzes the recognition and processing of DNA lesions. A damage recognition complex composed of 2 UvrA and 2 UvrB subunits scans DNA for abnormalities. Upon binding of the UvrA(2)B(2) complex to a putative damaged site, the DNA wraps around one UvrB monomer. DNA wrap is dependent on ATP binding by UvrB and probably causes local melting of the DNA helix, facilitating insertion of UvrB beta-hairpin between the DNA strands. Then UvrB probes one DNA strand for the presence of a lesion. If a lesion is found the UvrA subunits dissociate [...] | 0.621 |
| AOS64954.1 | AOS61193.1 | TL08_20815 | TL08_01770 | DNA polymerase III epsilon subunit-like 3'-5' exonuclease. | A/G-specific DNA-adenine glycosylase. | 0.526 |
| AOS64954.1 | AOS65671.1 | TL08_20815 | TL08_24465 | DNA polymerase III epsilon subunit-like 3'-5' exonuclease. | Exodeoxyribonuclease III. | 0.453 |
| AOS64954.1 | mutM | TL08_20815 | TL08_22380 | DNA polymerase III epsilon subunit-like 3'-5' exonuclease. | DNA-(apurinic or apyrimidinic site) lyase; Involved in base excision repair of DNA damaged by oxidation or by mutagenic agents. Acts as DNA glycosylase that recognizes and removes damaged bases. Has a preference for oxidized purines, such as 7,8-dihydro-8-oxoguanine (8-oxoG). Has AP (apurinic/apyrimidinic) lyase activity and introduces nicks in the DNA strand. Cleaves the DNA backbone by beta-delta elimination to generate a single-strand break at the site of the removed base with both 3'- and 5'-phosphates. | 0.510 |
| AOS64954.1 | radA | TL08_20815 | TL08_01780 | DNA polymerase III epsilon subunit-like 3'-5' exonuclease. | DNA repair protein RadA; DNA-dependent ATPase involved in processing of recombination intermediates, plays a role in repairing DNA breaks. Stimulates the branch migration of RecA-mediated strand transfer reactions, allowing the 3' invading strand to extend heteroduplex DNA faster. Binds ssDNA in the presence of ADP but not other nucleotides, has ATPase activity that is stimulated by ssDNA and various branched DNA structures, but inhibited by SSB. Does not have RecA's homology-searching function. | 0.591 |
| AOS64954.1 | recO | TL08_20815 | TL08_21345 | DNA polymerase III epsilon subunit-like 3'-5' exonuclease. | DNA replication and repair protein RecO; Involved in DNA repair and RecF pathway recombination. | 0.420 |
| AOS64954.1 | uvrB | TL08_20815 | TL08_10280 | DNA polymerase III epsilon subunit-like 3'-5' exonuclease. | Excinuclease ABC subunit B; The UvrABC repair system catalyzes the recognition and processing of DNA lesions. A damage recognition complex composed of 2 UvrA and 2 UvrB subunits scans DNA for abnormalities. Upon binding of the UvrA(2)B(2) complex to a putative damaged site, the DNA wraps around one UvrB monomer. DNA wrap is dependent on ATP binding by UvrB and probably causes local melting of the DNA helix, facilitating insertion of UvrB beta-hairpin between the DNA strands. Then UvrB probes one DNA strand for the presence of a lesion. If a lesion is found the UvrA subunits dissociate [...] | 0.468 |
| AOS65671.1 | AOS61193.1 | TL08_24465 | TL08_01770 | Exodeoxyribonuclease III. | A/G-specific DNA-adenine glycosylase. | 0.894 |
| AOS65671.1 | AOS64954.1 | TL08_24465 | TL08_20815 | Exodeoxyribonuclease III. | DNA polymerase III epsilon subunit-like 3'-5' exonuclease. | 0.453 |
| AOS65671.1 | nth | TL08_24465 | TL08_01295 | Exodeoxyribonuclease III. | Endonuclease III; DNA repair enzyme that has both DNA N-glycosylase activity and AP-lyase activity. The DNA N-glycosylase activity releases various damaged pyrimidines from DNA by cleaving the N-glycosidic bond, leaving an AP (apurinic/apyrimidinic) site. The AP-lyase activity cleaves the phosphodiester bond 3' to the AP site by a beta-elimination, leaving a 3'-terminal unsaturated sugar and a product with a terminal 5'- phosphate. | 0.950 |
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