Export your current network:
... as a bitmap image:
file format is 'PNG': portable network graphic
... as a high-resolution bitmap:
same PNG format, but at higher resolution
... as a vector graphic:
SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc
... as short tabular text output:
TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)
... as tabular text output:
TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)
... as an XML summary:
structured XML interaction data, according to the 'PSI-MI' data standard
... protein node degrees:
node degree of proteins in your network (given the current score cut-off)
... network coordinates:
a flat-file format describing the coordinates and colors of nodes in the network
... protein sequences:
MFA: multi-fasta format - containing the aminoacid sequences in the network
... protein annotations:
a tab-delimited file describing the names, domains and descriptions of proteins in your network
... functional annotations:
a tab-delimited file containing all known functional terms of protiens in your network
Browse interactions in tabular form:
node1 | node2 | node1 accession | node2 accession | node1 annotation | node2 annotation | score |
AOS61714.1 | AOS63237.1 | TL08_04420 | TL08_12115 | GTP-binding protein TypA/BipA. | Superfamily II RNA helicase. | 0.613 |
AOS62966.1 | AOS63237.1 | TL08_10760 | TL08_12115 | MerR HTH family regulatory protein. | Superfamily II RNA helicase. | 0.556 |
AOS62966.1 | AOS64910.1 | TL08_10760 | TL08_20595 | MerR HTH family regulatory protein. | Ribonuclease D. | 0.451 |
AOS62966.1 | rbpA-2 | TL08_10760 | TL08_13915 | MerR HTH family regulatory protein. | Putative DUF4109 family protein; Binds to RNA polymerase (RNAP), stimulating transcription from principal, but not alternative sigma factor promoters. Belongs to the RNA polymerase-binding protein RbpA family. | 0.764 |
AOS62966.1 | rpoZ | TL08_10760 | TL08_11520 | MerR HTH family regulatory protein. | DNA-directed RNA polymerase, omega subunit; Promotes RNA polymerase assembly. Latches the N- and C- terminal regions of the beta' subunit thereby facilitating its interaction with the beta and alpha subunits. | 0.813 |
AOS62966.1 | whiB-4 | TL08_10760 | TL08_23170 | MerR HTH family regulatory protein. | Transcription factor WhiB; Acts as a transcriptional regulator. Probably redox- responsive. The apo- but not holo-form probably binds DNA. | 0.771 |
AOS62966.1 | whiB-5 | TL08_10760 | TL08_23370 | MerR HTH family regulatory protein. | Transcription factor WhiB; Acts as a transcriptional regulator. Probably redox- responsive. The apo- but not holo-form probably binds DNA. | 0.852 |
AOS63237.1 | AOS61714.1 | TL08_12115 | TL08_04420 | Superfamily II RNA helicase. | GTP-binding protein TypA/BipA. | 0.613 |
AOS63237.1 | AOS62966.1 | TL08_12115 | TL08_10760 | Superfamily II RNA helicase. | MerR HTH family regulatory protein. | 0.556 |
AOS63237.1 | AOS63238.1 | TL08_12115 | TL08_12120 | Superfamily II RNA helicase. | Putative DUF4333 family protein. | 0.593 |
AOS63237.1 | AOS63239.1 | TL08_12115 | TL08_12125 | Superfamily II RNA helicase. | Putative acetyltransferase. | 0.557 |
AOS63237.1 | AOS64910.1 | TL08_12115 | TL08_20595 | Superfamily II RNA helicase. | Ribonuclease D. | 0.516 |
AOS63237.1 | era | TL08_12115 | TL08_21360 | Superfamily II RNA helicase. | GTP-binding protein Era; An essential GTPase that binds both GDP and GTP, with rapid nucleotide exchange. Plays a role in 16S rRNA processing and 30S ribosomal subunit biogenesis and possibly also in cell cycle regulation and energy metabolism. | 0.511 |
AOS63237.1 | rbpA-2 | TL08_12115 | TL08_13915 | Superfamily II RNA helicase. | Putative DUF4109 family protein; Binds to RNA polymerase (RNAP), stimulating transcription from principal, but not alternative sigma factor promoters. Belongs to the RNA polymerase-binding protein RbpA family. | 0.626 |
AOS63237.1 | rpoZ | TL08_12115 | TL08_11520 | Superfamily II RNA helicase. | DNA-directed RNA polymerase, omega subunit; Promotes RNA polymerase assembly. Latches the N- and C- terminal regions of the beta' subunit thereby facilitating its interaction with the beta and alpha subunits. | 0.592 |
AOS63237.1 | whiB-4 | TL08_12115 | TL08_23170 | Superfamily II RNA helicase. | Transcription factor WhiB; Acts as a transcriptional regulator. Probably redox- responsive. The apo- but not holo-form probably binds DNA. | 0.583 |
AOS63237.1 | whiB-5 | TL08_12115 | TL08_23370 | Superfamily II RNA helicase. | Transcription factor WhiB; Acts as a transcriptional regulator. Probably redox- responsive. The apo- but not holo-form probably binds DNA. | 0.561 |
AOS63238.1 | AOS63237.1 | TL08_12120 | TL08_12115 | Putative DUF4333 family protein. | Superfamily II RNA helicase. | 0.593 |
AOS63238.1 | AOS63239.1 | TL08_12120 | TL08_12125 | Putative DUF4333 family protein. | Putative acetyltransferase. | 0.789 |
AOS63239.1 | AOS63237.1 | TL08_12125 | TL08_12115 | Putative acetyltransferase. | Superfamily II RNA helicase. | 0.557 |
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