Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
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Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
AB406_0148Proline dehydrogenase. (390 aa)    
Predicted Functional Partners:
gcvP
Glycine dehydrogenase (decarboxylating); Belongs to the GcvP family.
   
 
 0.940
paaE
1,2-phenylacetyl-CoA epoxidase, subunit E.
    
 0.920
alr
Alanine racemase; Catalyzes the interconversion of L-alanine and D-alanine. May also act on other amino acids; Belongs to the alanine racemase family.
   
 
 0.881
catD
3-oxoadipate enol-lactonase 2.
   
 
  0.859
pip
Proline iminopeptidase.
   
 
  0.859
purL
Phosphoribosylformylglycinamidine synthase.
    
  0.697
sglT
Sodium/glucose cotransporter; Belongs to the sodium:solute symporter (SSF) (TC 2.A.21) family.
 
  
 0.656
rocA
1-pyrroline-5-carboxylate dehydrogenase; Belongs to the aldehyde dehydrogenase family.
 
 0.581
AB406_0147
Hypothetical protein.
       0.518
AB406_1110
Hypothetical protein; Belongs to the arginase family.
 
 
 0.506
Your Current Organism:
Riemerella anatipestifer
NCBI taxonomy Id: 34085
Other names: ATCC 11845, CCUG 14215, CCUG 21370, CIP 82.28, DSM 15868, JCM 9532, LMG 11054, LMG 11606, LMG:11054, LMG:11606, MCCM 00568, Moraxella anatipestifer, NCTC 11014, Pasteurella anapestifer, Pasteurella anatipestifer, Pfeifferella anatipestifer, R. anatipestifer
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