Export your current network:
... as a vector graphic:
SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc
... as short tabular text output:
TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)
... as tabular text output:
TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)
... as an XML summary:
structured XML interaction data, according to the 'PSI-MI' data standard
... protein node degrees:
node degree of proteins in your network (given the current score cut-off)
... network coordinates:
a flat-file format describing the coordinates and colors of nodes in the network
... protein sequences:
MFA: multi-fasta format - containing the aminoacid sequences in the network
... protein annotations:
a tab-delimited file describing the names, domains and descriptions of proteins in your network
... functional annotations:
a tab-delimited file containing all known functional terms of proteins in your network
Browse interactions in tabular form:
| node1 | node2 | node1 accession | node2 accession | node1 annotation | node2 annotation | score |
| AB406_0239 | cspA | AB406_0239 | AB406_0197 | Hypothetical protein. | Cold shock-like protein CspA. | 0.540 |
| AB406_0239 | rpoB | AB406_0239 | AB406_1420 | Hypothetical protein. | DNA-directed RNA polymerase subunit beta; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. | 0.488 |
| AB406_1224 | cspA | AB406_1224 | AB406_0197 | RNA polymerase rpb6; Promotes RNA polymerase assembly. Latches the N- and C- terminal regions of the beta' subunit thereby facilitating its interaction with the beta and alpha subunits. | Cold shock-like protein CspA. | 0.559 |
| AB406_1224 | cspG | AB406_1224 | AB406_0196 | RNA polymerase rpb6; Promotes RNA polymerase assembly. Latches the N- and C- terminal regions of the beta' subunit thereby facilitating its interaction with the beta and alpha subunits. | Cold shock-like protein CspG. | 0.559 |
| AB406_1224 | rhlE | AB406_1224 | AB406_0198 | RNA polymerase rpb6; Promotes RNA polymerase assembly. Latches the N- and C- terminal regions of the beta' subunit thereby facilitating its interaction with the beta and alpha subunits. | ATP-dependent RNA helicase RhlE; Belongs to the DEAD box helicase family. | 0.569 |
| AB406_1224 | rpoA | AB406_1224 | AB406_0780 | RNA polymerase rpb6; Promotes RNA polymerase assembly. Latches the N- and C- terminal regions of the beta' subunit thereby facilitating its interaction with the beta and alpha subunits. | DNA-directed RNA polymerase subunit alpha; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. | 0.986 |
| AB406_1224 | rpoB | AB406_1224 | AB406_1420 | RNA polymerase rpb6; Promotes RNA polymerase assembly. Latches the N- and C- terminal regions of the beta' subunit thereby facilitating its interaction with the beta and alpha subunits. | DNA-directed RNA polymerase subunit beta; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. | 0.976 |
| AB406_1224 | rpsU | AB406_1224 | AB406_1403 | RNA polymerase rpb6; Promotes RNA polymerase assembly. Latches the N- and C- terminal regions of the beta' subunit thereby facilitating its interaction with the beta and alpha subunits. | Hypothetical protein; Belongs to the bacterial ribosomal protein bS21 family. | 0.769 |
| AB406_1370 | cspA | AB406_1370 | AB406_0197 | Hypothetical protein. | Cold shock-like protein CspA. | 0.511 |
| clpS | cspA | AB406_1769 | AB406_0197 | ATP-dependent Clp protease adapter protein ClpS; Belongs to the ClpS family. | Cold shock-like protein CspA. | 0.488 |
| cspA | AB406_0239 | AB406_0197 | AB406_0239 | Cold shock-like protein CspA. | Hypothetical protein. | 0.540 |
| cspA | AB406_1224 | AB406_0197 | AB406_1224 | Cold shock-like protein CspA. | RNA polymerase rpb6; Promotes RNA polymerase assembly. Latches the N- and C- terminal regions of the beta' subunit thereby facilitating its interaction with the beta and alpha subunits. | 0.559 |
| cspA | AB406_1370 | AB406_0197 | AB406_1370 | Cold shock-like protein CspA. | Hypothetical protein. | 0.511 |
| cspA | clpS | AB406_0197 | AB406_1769 | Cold shock-like protein CspA. | ATP-dependent Clp protease adapter protein ClpS; Belongs to the ClpS family. | 0.488 |
| cspA | cspG | AB406_0197 | AB406_0196 | Cold shock-like protein CspA. | Cold shock-like protein CspG. | 0.691 |
| cspA | ppiB | AB406_0197 | AB406_2198 | Cold shock-like protein CspA. | Putative peptidyl-prolyl cis-trans isomerase. | 0.485 |
| cspA | rhlE | AB406_0197 | AB406_0198 | Cold shock-like protein CspA. | ATP-dependent RNA helicase RhlE; Belongs to the DEAD box helicase family. | 0.825 |
| cspA | rpoA | AB406_0197 | AB406_0780 | Cold shock-like protein CspA. | DNA-directed RNA polymerase subunit alpha; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. | 0.535 |
| cspA | rpoB | AB406_0197 | AB406_1420 | Cold shock-like protein CspA. | DNA-directed RNA polymerase subunit beta; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. | 0.554 |
| cspA | rpsU | AB406_0197 | AB406_1403 | Cold shock-like protein CspA. | Hypothetical protein; Belongs to the bacterial ribosomal protein bS21 family. | 0.539 |
page 1 of 3