STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
epsJPutative glycosyltransferase EpsJ. (297 aa)    
Predicted Functional Partners:
epsE
Putative glycosyltransferase EpsE.
 
     0.946
AB406_0646
Hypothetical protein.
  
    0.782
kfoC
Chondroitin synthase.
  
     0.775
wfgD
UDP-Glc:alpha-D-GlcNAc- diphosphoundecaprenol beta-1,3-glucosyltransferase WfgD.
  
     0.774
epsH
Putative glycosyltransferase EpsH.
 
    
0.756
AB406_0648
Glycosyl transferase.
 
    0.746
AB406_0650
Hypothetical protein.
 
    0.731
epsH-4
Putative glycosyltransferase EpsH.
 
    0.716
wecB
UDP-N-acetylglucosamine 2-epimerase.
  
  
 0.704
icaA
Poly-beta-1,6-N-acetyl-D-glucosamine synthase.
  
     0.688
Your Current Organism:
Riemerella anatipestifer
NCBI taxonomy Id: 34085
Other names: ATCC 11845, CCUG 14215, CCUG 21370, CIP 82.28, DSM 15868, JCM 9532, LMG 11054, LMG 11606, LMG:11054, LMG:11606, MCCM 00568, Moraxella anatipestifer, NCTC 11014, Pasteurella anapestifer, Pasteurella anatipestifer, Pfeifferella anatipestifer, R. anatipestifer
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