STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
AB406_0656Polysaccharide export protein. (241 aa)    
Predicted Functional Partners:
ptk
Tyrosine-protein kinase ptk.
 
 0.999
ywqD
Tyrosine-protein kinase YwqD.
 
 0.995
pglF
UDP-N-acetyl-alpha-D-glucosamine C6 dehydratase.
  
  
 0.838
AB406_0654
UDP-glucose 4-epimerase.
 
  
 0.714
pglC
Undecaprenyl phosphate N,N'-diacetylbacillosamine 1-phosphate transferase.
 
  
 0.671
tuaA
Putative undecaprenyl-phosphate N-acetylgalactosaminyl 1-phosphate transferase.
 
  
 0.590
wcaJ
UDP-glucose:undecaprenyl-phosphate glucose-1-phosphate transferase.
 
  
 0.567
wecA
Decaprenyl-phosphate N-acetylglucosaminephosphotransferase.
 
    0.531
AB406_0653
S23 ribosomal protein.
       0.518
kdsD
Arabinose 5-phosphate isomerase KdsD; Belongs to the SIS family. GutQ/KpsF subfamily.
     
 0.460
Your Current Organism:
Riemerella anatipestifer
NCBI taxonomy Id: 34085
Other names: ATCC 11845, CCUG 14215, CCUG 21370, CIP 82.28, DSM 15868, JCM 9532, LMG 11054, LMG 11606, LMG:11054, LMG:11606, MCCM 00568, Moraxella anatipestifer, NCTC 11014, Pasteurella anapestifer, Pasteurella anatipestifer, Pfeifferella anatipestifer, R. anatipestifer
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