Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
AB406_0695Hypothetical protein. (166 aa)    
Predicted Functional Partners:
AB406_1037
Hypothetical protein.
  
     0.772
AB406_1532
Gliding motility protein GldC.
  
     0.771
AB406_0694
Hypothetical protein.
       0.739
pepN-2
Aminopeptidase N.
  
     0.714
AB406_2093
Hypothetical protein.
  
     0.707
AB406_0696
Hypothetical protein.
       0.620
AB406_1140
Hypothetical protein.
  
     0.612
AB406_0885
Hypothetical protein.
  
     0.601
bshC
Hypothetical protein; Belongs to the BshC family.
  
     0.599
clpS
ATP-dependent Clp protease adapter protein ClpS; Belongs to the ClpS family.
  
     0.549
Your Current Organism:
Riemerella anatipestifer
NCBI taxonomy Id: 34085
Other names: ATCC 11845, CCUG 14215, CCUG 21370, CIP 82.28, DSM 15868, JCM 9532, LMG 11054, LMG 11606, LMG:11054, LMG:11606, MCCM 00568, Moraxella anatipestifer, NCTC 11014, Pasteurella anapestifer, Pasteurella anatipestifer, Pfeifferella anatipestifer, R. anatipestifer
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