STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
yheIPutative multidrug resistance ABC transporter ATP-binding/permease protein YheI. (554 aa)    
Predicted Functional Partners:
AB406_1540
Putative ABC transporter ATP-binding protein.
  
  
 
0.925
AB406_0830
Hypothetical protein.
       0.686
AB406_0831
Hypothetical protein.
       0.642
ppiB
Putative peptidyl-prolyl cis-trans isomerase.
 
 
 0.586
dnaK
Chaperone protein DnaK; Acts as a chaperone; Belongs to the heat shock protein 70 family.
 
 0.500
prtP
PII-type proteinase precursor.
  
    0.452
blh
Beta-lactamase hydrolase-like protein.
 
 
 0.448
yxlF
Putative ABC transporter ATP-binding protein YxlF.
 
0.419
ybhF
Putative ABC transporter ATP-binding protein YbhF.
0.419
Your Current Organism:
Riemerella anatipestifer
NCBI taxonomy Id: 34085
Other names: ATCC 11845, CCUG 14215, CCUG 21370, CIP 82.28, DSM 15868, JCM 9532, LMG 11054, LMG 11606, LMG:11054, LMG:11606, MCCM 00568, Moraxella anatipestifer, NCTC 11014, Pasteurella anapestifer, Pasteurella anatipestifer, Pfeifferella anatipestifer, R. anatipestifer
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