Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
AB406_0833Hypothetical protein. (552 aa)    
Predicted Functional Partners:
ppiB
Putative peptidyl-prolyl cis-trans isomerase.
  
 0.911
AB406_0834
Hypothetical protein.
 
    0.904
AB406_0836
Outer membrane transport energization protein tonb.
 
 
   0.862
AB406_0838
Outer membrane transport energization protein exbd.
 
 
   0.833
AB406_0837
Outer membrane transport energization protein exbd.
 
 
   0.803
AB406_1878
Hypothetical protein.
 
 
 0.788
AB406_2079
Tonb-dependent receptor.
  
     0.766
AB406_2242
Hypothetical protein.
  
     0.752
AB406_2080
Tetratricopeptide tpr_1 repeat-containing protein.
 
     0.750
AB406_0820
Hypothetical protein.
 
 
   0.744
Your Current Organism:
Riemerella anatipestifer
NCBI taxonomy Id: 34085
Other names: ATCC 11845, CCUG 14215, CCUG 21370, CIP 82.28, DSM 15868, JCM 9532, LMG 11054, LMG 11606, LMG:11054, LMG:11606, MCCM 00568, Moraxella anatipestifer, NCTC 11014, Pasteurella anapestifer, Pasteurella anatipestifer, Pfeifferella anatipestifer, R. anatipestifer
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